Transcription Factor

						

			
Accessions: T153789_1.02 (CISBP 1.02)

			
Names: RTA_EBVB9, T153789_1.02;
Organisms: EBV, Human herpesvirus 4, EpsteinBarr virus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 605
Pfam Domains:    81-584 Herpesvirus transcription activation factor (transactivator)
Sequence: 
(in bold interface residues)		   1 MRPKKDGLEDFLRLTPEIKKQLGSLVSDYCNVLNKEFTAGSVEITLRSYKICKAFINEAK   60
  61 AHGREWGGLMATLNICNFWAILRNNRVRRRAENAGNDACSIACPIVMRYVLDHLIVVTDR  120
 121 FFIQAPSNRVMIPATIGTAMYKLLKHSRVRAYTYSKVLGVDRAAIMASGKQVVEHLNRME  180
 181 KEGLLSSKFKAFCKWVFTYPVLEEMFQTMVSSKTGHLTDDVKDVRALIKTLPRASYSSHA  240
 241 GQRSYVSGVLPACLLSTKSKAVETPILVSGADRMDEELMGNDGGASHTEARYSESGQFHA  300
 301 FTDELESLPSPTMPLKPGAQSADCGDSSSSSSDSGNSDTEQSEREEARAEAPRLRAPKSR  360
 361 RTSRPNRGQTPCPSNAAEPEQPWIAAVHQESDERPIFPHPSKPTFLPPVKRKKGLRDSRE  420
 421 GMFLPKPEAGSAISDVFEGREVCQPKRIRPFHPPGSPWANRPLPASLAPTPTGPVHEPVG  480
 481 SLTPAPVPQPLDPAPAVTPEASHLLEDPDEETSQAVKALREMADTVIPQKEEAAICGQMD  540
 541 LSHPPPRGHLDELTTTLESMTEDLNLDSPLTPELNEILDTFLNDECLLHAMHISTGLSIF  600
 601 DTSLF
Interface Residues: 50, 410
3D-footprint Homologues: 6waa_D, 7lcc_A
Binding Motifs: M3802_1.02 krCACCrCrwywsrcGGmCar
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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