Transcription Factor

						

			
Accessions: Q9LRW7 (JASPAR 2024)

			
Names: IDD11_ARATH
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q9LRW7
Length: 513
Pfam Domains:    98-121 Zinc-finger double-stranded RNA-binding
   99-121 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MMNKDMLLHQHQQPQQDENMSNLTSASGDQASVSSGNITEASGSNYFPHHQQQQEQQQQQ   60
  61 LVVPDSQTQKKRRNQPGNPDPESEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRG  120
 121 HNLPWKLKQRSNKEVIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  180
 181 CSKKYAVQSDCKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCEALAEETAREVVIPQN  240
 241 QNNNQPNPLLIHQSASHPHHHHQTQPTINVSSSSSSSHNHNIINSLHFDTNNGNTNNSNN  300
 301 SNNHLHTFPMKKEQQSNDHIMNYHHSIIPPWLAPQPHALTSSNPNPSNGGGGGGSLFSLA  360
 361 SPAMSATALLQKAAQMGSTKTPPLPPTTAYERSTHNNNLTTTMAAMMTSPSGFISSNNNN  420
 421 HVLFQDYNASGFDNHGREEAFDDTFGGFLRTNEVTAAAGSEKSTKSGGGEGLTRDFLGLR  480
 481 PLMSHNEILSFAGLGSCINSSASDQLHPKPWQG
Interface Residues: 110, 112, 113, 115, 116, 118, 119, 122, 159, 160, 161, 162, 164, 165, 186, 187, 188, 189, 190, 192, 193, 213, 214, 215, 216, 219, 266, 275, 276, 277, 280, 281, 284
3D-footprint Homologues: 6e94_A, 5ei9_F, 2gli_A, 8cuc_F, 6u9q_A, 5v3j_F, 7y3m_I, 2jpa_A, 6ml4_A, 1g2f_F, 5kl3_A, 4x9j_A, 2lt7_A, 1llm_D, 8h9h_G, 7n5w_A, 2kmk_A, 2drp_D, 2wbs_A, 4umk_D
Binding Motifs: UN0402.1 masAAaACGACAAAAwww
MA2104.1 AAaACGACAAAA
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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