Transcription Factor

						

			
Accessions: T017944_1.02 (CISBP 1.02)

			
Names: NCU06744, T017944_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:bHLH
Length: 573
Pfam Domains:   475-524 Helix-loop-helix DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MTQRQLHTASRQPSLQLLSRQLLPTGPASADMPPPPPLHHQEPPTPDQPQPVFGYLPQNV   60
  61 AQPPAPLATLLTDDQSRYLDSFFQNLNDAAADDPFLISPDFEEEGLAFTSEWNTRPGNLV  120
 121 GSNTSFAPFARTNFNTGFSDLSSVHSFGGPSFNHQLQAPPRATDGIHDLLNAAAALPNEV  180
 181 GGHGGNTFEQSYGGSSTSGGQHGIQQTDNSFGGAAIALAMRPYASINEPSNSFYRDMIFQ  240
 241 QPGQSQQPRQNSYQHGQPVRIQFGTDTSFSQSTFTPQRTQESSEVMSQAQLKVLDCLVPS  300
 301 QSAATTRASSPVTQGQGQGNEHHGSFSPPKLRTHHRPSLPQALASIQEEGGPPKKRRATV  360
 361 DNTTNNDAAMASPGPLATFSNSPYSPFSQSGFAPSSPMTSLGGRKSAGPGGAKGKKLARQ  420
 421 QGLSTPNTASEPTDSQAPSGDTRSPNDDEDNKPARPGKRRRSYKEKKPNLTLEQKRLNHI  480
 481 DSEKRRRYMIKSAYDNLSIIIPGYKEAGVSKAGGIQLAVDFLKKIMEENEELKERLERAR  540
 541 EKAGVKSTGTDVEMTERGIQTGQEGGDNGAEEQ
Interface Residues: 29, 478, 479, 480, 482, 483, 486, 487, 491, 509, 511
3D-footprint Homologues: 8jpx_A, 1an4_A, 4h10_B, 7ssa_L, 1am9_A, 8osl_O, 5gnj_I, 7xq5_A, 6g1l_A, 8ia3_B, 7d8t_A, 2ql2_D
Binding Motifs: M0237_1.02 ydrtCACGTG
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.