Transcription Factor
| Accessions: | T21607 (AthalianaCistrome v4_May2016), Q9LVQ7 (JASPAR 2024) |
| Names: | At5g66730, T21607;, IDD1_ARATH, Protein indeterminate-domain 1, Zinc finger protein ENHYDROUS |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2H2 |
| Length: | 500 |
| Pfam Domains: | 60-83 Zinc-finger double-stranded RNA-binding |
| Sequence: (in bold interface residues) | 1 MPVDLDNSSTVSGDASVSSTGNQNLTPKSVGKKKRNLPGMPDPDAEVIALSPKTLMATNR 60 61 FVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGD 120 121 LTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFIT 180 181 HRAFCDALAEESAKNHTQSKKLYPETVTRKNPEIEQKSPAAVESSPSLPPSSPPSVAIAP 240 241 APAISVETESVKIISSSVLPIQNSPESQENNNHPEVIIEEASRTIGFNVSSSDLSNDHSN 300 301 NNGGYAGLFVSSTASPSLYASSTASPSLFAPSSSMEPISLCLSTNPSLFGPTIRDPPHFL 360 361 TPLPPQPAMSATALLQKAAQMGSTGSGGSLLRGLGIVSTTSSSMELSNHDALSLAPGLGL 420 421 GLPCSSGGSGSGLKELMMGNSSVFGPKQTTLDFLGLGRAVGNGGNTGGGLSALLTSIGGG 480 481 GGIDLFGSGEFSGKDIGRSS |
| Interface Residues: | 46, 47, 50, 71, 72, 73, 74, 75, 77, 78, 80, 81, 84, 85, 87, 88, 91, 105, 106, 113, 115, 116, 117, 118, 119, 120, 121, 122, 123, 125, 126, 147, 148, 149, 150, 151, 152, 153, 154, 174, 175, 176, 177, 180, 181, 182, 183, 266 |
| 3D-footprint Homologues: | 8cuc_F, 2i13_A, 7n5w_A, 4x9j_A, 6u9q_A, 6blw_A, 5ei9_F, 2gli_A, 1f2i_J, 5v3j_F, 7ysf_A, 5kkq_D, 5yel_A, 8h9h_G, 1tf3_A, 7eyi_G, 6wmi_A, 7y3m_I, 6e94_A, 2jpa_A, 5kl3_A, 1mey_C, 5k5i_A, 1g2f_F, 2wbs_A, 6ml4_A, 2lt7_A, 1ubd_C, 2kmk_A, 2drp_D, 1llm_D, 7txc_E, 5v8f_E |
| Binding Motifs: | M0310 wwTTTTGTCkTtTtbtk M0321 hasAAAAmGACAAAAaw UN0398.1 wwTTTTGTCkTtTtbtk MA2396.1 TTTTGTCkTtTt UN0398.2 TTTTGTCkTtTt |
| Publications: | Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed] |
| Related annotations: | PaperBLAST |
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