Transcription Factor

						

			
Accessions: T060940_1.02 (CISBP 1.02)

			
Names: NCU01122, T060940_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 935
Pfam Domains:     54-78 Zinc finger, C2H2 type
    54-78 C2H2-type zinc finger
   84-108 C2H2-type zinc finger
  394-692 Fungal specific transcription factor domain 
Sequence: 
(in bold interface residues)		   1 MPVQQPQLPLPDGPGPHAMGTATGTVLPSSTSVTSPPPGSAYKRASRKGATKRFACNYED   60
  61 CNKVYSRAEHLQRHQLNHDPKEIYRCDFAGCEQQFVRADLLSRHRKRHSASYVPRNRVPS  120
 121 FSTPKDHHDLPTPGQSTSSQGQTPASSTSHQVAIESRSIFQGAPHDAAILLIPDSRSQQP  180
 181 QSQHQVLPSLQHLQSHHQQHQQQGHHSHHQGASAMDQHASPHWASPTSNISSAHALPPKN  240
 241 GFFQQNVNHGHLAGQQPPLLPYNPNVDFPSEDLARENFAVWLFNPQDYTCDLSVSHLPFL  300
 301 DGGLESALNNNIHYDYDSITSGRSQVDSTPTRVTESDSDFITEARLQELSSLFFAYNAKQ  360
 361 LRCRPNSLRITEVVDKSGCGTMSVLNLDMTRDCLQEYWDHVSARLPIVHQPTLSYNKCSV  420
 421 YLLLVMIALGAASLRMRNCGDCYTHYDVVADIIVLGVRLDILGTEEAIPPIALWVAQALV  480
 481 LLEFYEKLYSSRLLHERAQTYHPVTLNLLRRGSPLIGRSGSESPPEPTGSADYNGNSTQS  540
 541 VTSLDSRTWWSRWAQTESMHRVVFAAFMLDITHAAMFGHKADMVPYEIQLPLPCDDNLWS  600
 601 ASNPDNVRQLDQNLRMYGVKPVSFLEGLKLAIHGKEVMTHSFGRMIIMSGLLSVGWHLRR  660
 661 KETHNLMDLTKIPNSKSDSWKMTLLSAFDQWKAYFDKAQGSLGGSNMVDPIIPYAGSNGP  720
 721 IQSAAVLYHLAQFSLFSDILDCQILAGAKRLLGKKISDQAYLKVVPKMKAWASTPGTRHA  780
 781 ILHAYKVLHCILVDPRGNKGEQNWQNKGHGLPPMTMQPYSCRNEPDPHRPWIMYYAALSI  840
 841 WAFVRASTLTSAAPVSSITSRSRKPEQVNFNRVAAYLSKVAALSELPESAAAGLKDGLPE  900
 901 LLDVLCSVLYEANSELLKEACERLTCCKDILTSEQ
Interface Residues: 43, 44, 45, 46, 47, 66, 67, 68, 69, 70, 72, 73, 75, 76, 79, 96, 97, 98, 99, 100, 102, 103, 107, 117, 910, 917
3D-footprint Homologues: 1tf3_A, 2kmk_A, 6jnm_A, 3uk3_C, 7n5w_A, 5ei9_F, 2gli_A, 1f2i_J, 7ysf_A, 6u9q_A, 5kl3_A, 1g2f_F, 8gn3_A, 6blw_A, 1ubd_C, 5v3j_F, 1llm_D, 6e94_A, 4x9j_A, 2drp_D, 7txc_E, 2lt7_A, 8h9h_G, 2jpa_A, 2wbs_A, 1tf6_A, 5yj3_D, 6a57_A, 8pm4_A
Binding Motifs: M0466_1.02 gyGGGgg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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