Transcription Factor

						

			
Accessions: T136764_1.02 (CISBP 1.02)

			
Names: LCOR, T136764_1.02;
Organisms: Gasterosteus aculeatus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Pipsqueak
Length: 546
Pfam Domains:   495-536 helix-turn-helix, Psq domain
Sequence: 
(in bold interface residues)		   1 MASQCKSQQCTIDRRGFRQELDSWRHKLVHCVGFESILEGLFGPELIDDPTLFKDFEPTA   60
  61 VSDWSFDENCLFCCLRRDKVKEHLIGLSNKELEDSPKPLLVKDPTAISRLEKQAEEFLNA  120
 121 VLSRKDVPNFSDPHIPVVAREILQRMIRQFAAEYTSKTSSPQDSGSDSQPCFDQSLPTPS  180
 181 LLSGADPKLLMADQDAPLDLTIKRPPAVPRDQGSDGVLDLSIKKSRCSSTSSLPVRSPCL  240
 241 SPATSTLKGNSFEDYVVRSLRADGQVGLFMKSLQDGRRRENIGHSARYKPSSSLAYALHI  300
 301 KEEPDVESDPESPLSRSSAPTELFKSGSASWNSKSHFGALLKLKTNSEASEHLKDIPRLL  360
 361 EAAGLWSKSLAYEKGNLQEACRDHGLSLSHSSSCDLKIPQVRVLATDPCWDSLSTVYSGL  420
 421 ACEGGLGKALRSILPRQIQNKSSGGFSSSGSEKEYWPQDADRKSLRGSCPLDSESDLSNK  480
 481 QPRKKRGRYRQYNTDLLEEAIEVVMGGKMSVSKAQTIYGIPHSTLEYKVKERLGTLKHPP  540
 541 KKKLKL
Interface Residues: 109, 146, 203
3D-footprint Homologues: 2vla_A, 3cw7_C
Binding Motifs: M1506_1.02 rGTwTCgrtt
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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