Transcription Factor

Accessions: DREB2A (Athamap 20091028), T24768 (AthalianaCistrome v4_May2016)
Names: Dehydration-responsive element-binding protein 2A, DREB2A, Protein DREB2A, AT5G05410, DREB2, T24768;
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, AthalianaCistrome v4_May2016 2
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP
Length: 335
Pfam Domains: 77-127 AP2 domain
Sequence:
(in bold interface residues)
1 MAVYDQSGDRNRTQIDTSRKRKSRSRGDGTTVAERLKRWKEYNETVEEVSTKKRKVPAKG 60
61 SKKGCMKGKGGPENSRCSFRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDE 120
121 AAKAMYGPLARLNFPRSDASEVTSTSSQSEVCTVETPGCVHVKTEDPDCESKPFSGGVEP 180
181 MYCLENGAEEMKRGVKADKHWLSEFEHNYWSDILKEKEKQKEQGIVETCQQQQQDSLSVA 240
241 DYGWPNDVDQSHLDSSDMFDVDELLRDLNGDDVFAGLNQDRYPGNSVANGSYRPESQQSG 300
301 FDPLQSLNYGIPPFQLEGKDGNGFFDDLSYLDLEN
Interface Residues: 83, 85, 86, 87, 91, 93, 95, 98, 102, 104
3D-footprint Homologues: 7wq5_A, 1gcc_A, 5wx9_A, 7et4_D
Binding Motifs: DREB2A TACTRCCGACAyGA
M0084 wgrydrwGkCGGTGgwgrwrr
M0102 hhthmACCGMCwTwa
Binding Sites: DREB2A_7
DREB2A_2
DREB2A_3
DREB2A_4
DREB2A_5
DREB2A_6
DREB2A_1
Publications: Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K. 2003. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J. 34:137-48. [Pubmed]

Sakuma Y, Maruyama K, Osakabe Y, Qin F, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2006. Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18: 1292-309. [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.