Transcription Factor

						

			
Accessions: T057854_1.02 (CISBP 1.02)

			
Names: lmd, T057854_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:C2H2 ZF
Length: 866
Pfam Domains:   489-515 Zinc-finger double domain
  503-526 C2H2-type zinc finger
  503-526 Zinc finger, C2H2 type
  518-545 Zinc-finger double domain
  534-556 C2H2-type zinc finger
  562-586 Zinc finger, C2H2 type
  562-586 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MSSSLKTSQSGGMYVKTSSISGISSISGKEAASCYGGFMSPPLSANITANNGEREMFRVP   60
  61 GAKVETNESYACGELQFPDFSHLCFAAETPNSVFSDCHNYAGQDQQQDSDQDDIVCAAAE  120
 121 NTGMPYQQGQYTQLNREDIFRFEPEDIARLTGESELPGMLQHPQTPYTPYTPYTPYTPCS  180
 181 AQNSQYAVQPANDSINLDIDYFNYDEINCQSKNQSPCSSPHLDAWLNFNLGEISAAASSS  240
 241 AASPKLGNVFEEQVKEEASPAKLPSMNSTFGTPKCIPMCASNYEDYANLYQQGSGYSTEN  300
 301 YHNNMAQVVEKPNREHKAIWTIDELDELMLGEQQQFLQHHLQQQHLQEQQEQLHQPHGQE  360
 361 QQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYNEEEDDLDNDVFAPPAESDPKPDST  420
 421 CCDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCPRRY  480
 481 KPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGERPYGCQYKGCL  540
 541 KAFSNSSDRAKHQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLRRKSA  600
 601 GGASVPPSGPKKAAKTRRHSESALVQRGVGAGVGVAVPSAPGDQRQHRSNSCSEALLLQQ  660
 661 HQQQQQQQQQQQKQHQPENERTTDRSNCGTGVAANNNSMNFNELSNCIVIIEHNQSGGPA  720
 721 GPATLATATATTTATATYGNGNMAPAPETEVLSVCSGGGSSNSNSNNNRYNANINQLSEL  780
 781 EQLLTTAKPTGTPAASANGISLANNNGRANGDSKCHLSEFVSFEYVTKYLTDVYEPQCKS  840
 841 PQPPANFHLQPEFDNSFDMLDFPQFI
Interface Residues: 448, 450, 451, 454, 484, 485, 486, 487, 488, 490, 491, 493, 494, 495, 497, 514, 515, 516, 517, 518, 520, 521, 544, 545, 546, 547, 548, 549, 550, 551, 552, 555, 574, 575, 576, 577, 578, 579, 580, 581, 582
3D-footprint Homologues: 5yel_A, 1ubd_C, 3uk3_C, 7n5w_A, 1tf6_A, 5ei9_F, 6ml4_A, 5v3j_F, 5kkq_D, 2gli_A, 8h9h_G, 7ysf_A, 5k5i_A, 6e94_A, 2jpa_A, 8ssq_A, 7w1m_H, 8ssu_A, 8cuc_F, 7y3l_A, 1tf3_A, 6jnm_A, 1g2f_F, 6blw_A, 2kmk_A, 1llm_D, 6u9q_A, 8gn3_A, 4x9j_A, 1f2i_J, 5kl3_A, 2lt7_A, 7y3m_I, 6a57_A, 2wbs_A, 7txc_E, 2drp_D, 5yj3_D, 4m9v_C
Binding Motifs: M5079_1.02 CkGyGGGGGGtmkk
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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