Transcription Factor
| Accessions: | T08054 (AthalianaCistrome v4_May2016), P42776 (JASPAR 2024) |
| Names: | AT2G46270, GBF3, T08054;, AtbZIP55, bZIP transcription factor 55, G-box-binding factor 3, GBF3_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP |
| Length: | 382 |
| Pfam Domains: | 1-181 G-box binding protein MFMR 257-318 bZIP transcription factor 259-310 Basic region leucine zipper |
| Sequence: (in bold interface residues) | 1 MGNSSEEPKPPTKSDKPSSPPVDQTNVHVYPDWAAMQAYYGPRVAMPPYYNSAMAASGHP 60 61 PPPYMWNPQHMMSPYGAPYAAVYPHGGGVYAHPGIPMGSLPQGQKDPPLTTPGTLLSIDT 120 121 PTKSTGNTDNGLMKKLKEFDGLAMSLGNGNPENGADEHKRSRNSSETDGSTDGSDGNTTG 180 181 ADEPKLKRSREGTPTKDGKQLVQASSFHSVSPSSGDTGVKLIQGSGAILSPGVSANSNPF 240 241 MSQSLAMVPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMA 300 301 LRSELNQLNEKSDKLRGANATLLDKLKCSEPEKRVPANMLSRVKNSGAGDKNKNQGDNDS 360 361 NSTSKLHQLLDTKPRAKAVAAG |
| Interface Residues: | 252, 255, 256, 259, 265, 268, 269, 270, 272, 273, 276, 277 |
| 3D-footprint Homologues: | 5zfz_A, 2wt7_B, 7x5e_E, 4eot_A, 1gd2_G, 5t01_B, 2dgc_A, 1dh3_C |
| Binding Motifs: | M0198 TGCCACGTsasmwwh M0192 dwwkvhsACGTGKCa MA1351.2 sACGTGGCAww MA1351.3 ACGTGGCA |
| Binding Sites: | MA1351.3.2 / MA1351.3.6 / MA1351.3.7 / MA1351.3.9 MA1351.3.11 MA1351.3.1 / MA1351.3.5 MA1351.3.12 / MA1351.3.15 / MA1351.3.18 / MA1351.3.19 MA1351.2.1 MA1351.2.10 MA1351.2.11 MA1351.2.12 MA1351.2.13 MA1351.2.14 MA1351.2.15 MA1351.2.16 MA1351.2.17 MA1351.2.18 MA1351.2.19 MA1351.2.2 MA1351.2.20 MA1351.2.3 MA1351.2.4 MA1351.2.5 MA1351.2.6 MA1351.2.7 MA1351.2.8 MA1351.2.9 MA1351.3.10 / MA1351.3.3 MA1351.3.13 MA1351.3.14 MA1351.3.16 MA1351.3.17 MA1351.3.20 MA1351.3.4 MA1351.3.8 |
| Publications: | Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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