Transcription Factor

						

			
Accessions: T032964_1.02 (CISBP 1.02)

			
Names: CNBG_2239, T032964_1.02;
Organisms: Cryptococcus neoformans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 734
Pfam Domains:     24-48 C2H2-type zinc finger
    24-48 Zinc finger, C2H2 type
    40-65 Zinc-finger double domain
    54-78 C2H2-type zinc finger
    54-78 Zinc finger, C2H2 type
    70-94 Zinc-finger double domain
   84-106 Zinc finger, C2H2 type
   98-124 Zinc-finger double domain
  112-137 Zinc finger, C2H2 type
  113-137 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MDVLDLVNDHNHVGAGHNGQTRPYVCTFGTCDKAFARKSDLARHFKIHTNDRAFVCTYRG   60
  61 CGKSFIQRSALTVHYRVHTGERPHHCETCNKAFADSSSLARHRRIHTGKRPYTCYAAGCG  120
 121 KPFARRNTLLKHFKRQHPQLPPPSTSAQRTTVRMPVQSLGLRSSTASLFSQQSLNSHEER  180
 181 YSASPSIAGAPHGFAAPHPPKGAAYSLYGGFPEQVLGVHQSTRQPIIFQGSGGIRPHFQQ  240
 241 SLITSPISTSRPHFVGGHAAQTPTSPAHHERDKHSISPVPSVATKDFGLGQYASPLSAYP  300
 301 HASSYPLTRITSDSGIIWPKSISAPGESRYEASQWSGGNVGGGFHASQLSVPHTPTHLSP  360
 361 SYPYHLPMQQRSATNPLPKTRQLYSPSCNGSDDERDEPLVSLSDAHPTFAIHSPQGTVGV  420
 421 PMSSVEVSSVSHMPDHGAQILFAPSHNGQHHSAPPAIQRFNSMPAVPTMSSWGQISEYQT  480
 481 QSAGDAKSSDEEWEELEKEILSREMSVGVDKELSPATEEEKTPKDGEPINYWGEPIAYPA  540
 541 HPDLQHRKNPFHSISSNFIHHMHSSDPLPPIQIFSNQPHHMVLTPINPNGMYPTLITPGE  600
 601 DWAQRHIKPTTMLGRGHPQQHIDVKNKKNGSEIAEHIALPTPPKHQGHRKDERSMTAVGL  660
 661 GIANVHFTQPHVIDTGHASEVELEDLESEESDAAPEDGSDDEFVLGRKPRKNTKKGGVKK  720
 721 KGARTATKRRHSSR
Interface Residues: 36, 37, 38, 39, 40, 42, 43, 45, 46, 47, 49, 66, 67, 68, 69, 70, 72, 73, 74, 94, 95, 96, 97, 98, 99, 100, 101, 102, 104, 124, 125, 126, 127, 128, 129, 130, 131, 132, 135, 162
3D-footprint Homologues: 7n5w_A, 6ml4_A, 5v3j_F, 8ssq_A, 7w1m_H, 6blw_A, 5k5l_F, 5yel_A, 4x9j_A, 2gli_A, 8ssu_A, 1f2i_J, 5kkq_D, 1tf6_A, 5ei9_F, 1g2f_F, 2kmk_A, 8h9h_G, 6e94_A, 7ysf_A, 2jpa_A, 1ubd_C, 1tf3_A, 8cuc_F, 7y3l_A, 6jnm_A, 3uk3_C, 6u9q_A, 5kl3_A, 7txc_E, 1llm_D, 4m9v_C, 2lt7_A, 6a57_A, 2drp_D, 2wbs_A, 8gn3_A, 5yj3_D, 5k5i_A, 7y3m_I
Binding Motifs: M0368_1.02 gycYGyGCAcr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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