Transcription Factor

						

			
Accessions: 6sdg_B (3D-footprint 20231221)

			
Names: A0A0G3FH20_MARPO, Auxin response factor
Organisms: Marchantia aquatica, Marchantia polymorpha (Liverwort)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: A0A0G3
Length: 314
Pfam Domains:    84-185 B3 DNA binding domain
  209-289 Auxin response factor
Sequence: 
(in bold interface residues)		   1 IDAELWYACAGPQKALPPVGSVVAYLPQGHIEQVASFNNQIPRYNLPAVIPCMLNDIQLS   60
  61 ADPDSDEVYATLTLCPMSEQSRSFTKTLTVSDTSTHGGFSVPRRAADDCLPKLDMSLNPP  120
 121 NQELVAKDLHGNEWRFRHIFRGQPKRHLLTTGWSVFVSQKRLVAGDAVLFLRGENGQLRV  180
 181 GVRRAPRQQQLQPKVLTSPTMHIGVLAAAAHAATEKSRFSLIYNPRSCPSEFVIPYSKYL  240
 241 KAVKSNFNVGQRFKMKFESPSDRRHTGTITGICDFDPARWPGSEWRSLQVNWDESSSSER  300
 301 QERVSPWEVEPGNS
Interface Residues: 91, 96, 97, 98, 100, 141, 143, 144, 146, 147
3D-footprint Homologues: 7et6_A, 6j9c_D, 6sdg_B, 6ycq_A
Binding Motifs: 6sdg_AB tTGTcGGCnnnnnGCcnACA
6sdg_B tTGTcGGC
Binding Sites: 6sdg_C
6sdg_D
			
Publications: Kato H, Mutte SK, Suzuki H, Crespo I, Das S, Radoeva T, Fontana M, Yoshitake Y, Hainiwa E, van den Berg W, Lindhoud S, Ishizaki K, Hohlbein J, Borst JW, Boer DR, Nishihama R, Kohchi T, Weijers D. Design principles of a minimal auxin response system. Nat Plants 6:473-482 (2020). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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