Transcription Factor
| Accessions: | T161812_1.02 (CISBP 1.02) |
| Names: | NCU08658, T161812_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Zinc cluster |
| Length: | 1120 |
| Pfam Domains: | 458-539 ARC105 or Med15 subunit of Mediator complex non-fungal |
| Sequence: (in bold interface residues) | 1 MNPGVQHPKIHTNQWIVERHRALPPPSSAHLAALDDHSQSYSAVTDSYPTSGGPYEVSPA 60 61 KRVRISGILASSTAGWGTGQQHGQAHDAEVGPSTETGPRAPKSTYREKNGDITVKNSNAI 120 121 PQSGSTSSSVNTNNKSRRVRTGCLTCRGRHLKCDEAFPECNNCRKSCRECKRGLRLNFID 180 181 TRVKSPPFVPPTLEWSVQFHDESRLIASEYQGGLGRYPRLDQNTAVTPPHETELDATLRV 240 241 VAQKQDAGDGKTYHPDNDVTPGLGEQDVVDNGSGAGLIIKLSPNQPIYHGNQLFQPQDLH 300 301 LRNDSDGPFTMRVKISQHHSAKDSWASQAQGYRRSEASSIAVPSFSQHGHQSQSVRQSVP 360 361 LTTYGLQTSQTQHAPEAMSENSTARTTPSKKTTVERDYLSTDSEIHLMQVFISEVAPWMD 420 421 ILSKGKHFANMMPDLALKSPMLLNALLACGTMHLSLTQRHQQQQQQQQQQQQQQQQQQQQ 480 481 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSSQPSG 540 541 ISTINKACSYYDLAMMELLHNLEQTGSPSDRNAAECATAATVLNAYDIMNSGGNPSPSPF 600 601 PLSRLQQQQQQRVAVDYHIAGCARALVQECGWNANSASATGTGVGEACFWFNGCMEVLSC 660 661 LQPALVMMNSWQQTPTVWDPDQWGLDVNVDRWATAANSTAVTGNDGNLKIIEDDDQSPFG 720 721 LRRLGASGGGGYGTGNGSGEEELWAQRILYVLAKVVNFCSANNSVSRYQETSPHDEQMRL 780 781 QRRFTEWKSLNDMCDAWRSNCPRSMRPYGYVRSSSSGSLFPNVWLINRPALIARLFYHVA 840 841 MCILAQVNPVSPRDSDANRELQQHHAQQVCGIAAHNKDRAVASIVTRCVATVGGVLSDRV 900 901 EQTEALAILERISTETGWRLGSLMTDLKRAWSWGVVETPNGGGGGGTNAANENNSGRGGG 960 961 GGGGGGGGKAFASALLGAGDLTSATGQTTMELPLPLPSRPPSILQLFGTSSQAQQQQAPA 1020 1021 ARTPSTAAATTYSNSPTIPNLTTAQPNLAITASSSRHQTHQTHHSHPTHQSKPSPPSSAV 1080 1081 GVSQQAYQRWYQQAPSPIRSGTMSSQQMRGTGGSSSLGWG |
| Interface Residues: | 138, 149, 150, 151, 191 |
| 3D-footprint Homologues: | 6o19_A, 1pyi_A, 1hwt_C, 1zme_D, 7uik_T, 1d66_B, 3coq_A, 7bzg_B |
| Binding Motifs: | M1761_1.02 wTAgCCGag |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.