Transcription Factor

						

			
Accessions: T148981_1.02 (CISBP 1.02)

			
Names: CoBra, T148981_1.02;
Organisms: Capsaspora owczarzaki
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:T-box
Length: 685
Pfam Domains:    70-250 T-box
Sequence: 
(in bold interface residues)		   1 MTSNHFSSTNVATSAPIVVPTPSTSDVTLSRASSSAAAAAAALDSSDTHRYIKHVAYHNQ   60
  61 PSAELEQPNVALESSKLWAKFADATNEMIVTRTGRNMFPVLRFDITNLDPNTLYAIMLDI  120
 121 APADGIRWKYVSGEWWVGGKSDAPTGPTMYVHPDSPKSGKYWMQRPISFSRLKLTNRPNT  180
 181 KGNIVLSSLHKYQPQLHIVSVPSMNAPTHGQPTSVHTFPETAFIAATAYQNDYIKDLKIK  240
 241 NNPFAKAFLNPRDRPRSSRGDDDDDDDNDDNDDNDADEHEEDSGSDGSLPGAGGREGGRP  300
 301 VRTRKPPSPFKGGSSTTSGTTRTRVPSGSRSSSSSLPSSSASELHAIQGLRPSDLSAMPN  360
 361 SMHVQPPSQQQLSSMQYVSPQRVFYAADSAPPPYAGQPQQLQQGMPYGSNPTTTTSVAFP  420
 421 AAGGEGMNGGYYQQPVSLVQSMQPGQPQSMQPIQQQPIQQQQPIQQQQQQQQQLGQYAAQ  480
 481 TNVLPYGQPQMVDRRVFYEQQQPQLQQQQQLQQLQPLQQQQQQLQPLQRQPPTSSSEIGS  540
 541 SLDGVMTLPLASNTMPHQSMQMGSWSQPPSGGYYSMSGQPVSVSYSAPTMQPMTTFAQRP  600
 601 LMQQISQQTPSQQQQHLPQVVFTSQGGGGHQLESQALLWLQQQPGPVNAPTQGLKRAALE  660
 661 AFNASESDPGAPWTKREHIDAARVE
Interface Residues: 95, 227, 228, 244, 247, 248
3D-footprint Homologues: 4a04_B, 1h6f_B, 5flv_I, 1xbr_B, 6f59_B, 2x6v_A
Binding Motifs: M1622_1.02 ragGTGtgAa
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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