Transcription Factor
Accessions: | 6es3_K (3D-footprint 20231221) |
Names: | Caudal-type homeobox protein 2, CDX-3, CDX2_HUMAN, Homeobox protein CDX-2 |
Organisms: | Homo sapiens |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Length: | 72 |
Pfam Domains: | 5-60 Homeobox domain |
Sequence: (in bold interface residues) | 1 RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERK 60 61 INKKKLQQQQQQ |
Interface Residues: | 4, 5, 6, 7, 45, 46, 48, 49, 52, 53, 56, 57, 58, 59, 60 |
3D-footprint Homologues: | 3d1n_M, 1puf_A, 3lnq_A, 1nk2_P, 1jgg_B, 7q3o_C, 6es3_K, 2ld5_A, 2h1k_B, 7psx_B, 2lkx_A, 6a8r_A, 3cmy_A, 2hdd_A, 1fjl_B, 5jlw_D, 3rkq_B, 2r5y_A, 4xrs_G, 2hos_A, 1ig7_A, 5zfz_A, 4cyc_A, 2d5v_B, 5flv_I, 5zjt_E, 3a01_E, 1e3o_C, 1au7_A, 1le8_A, 7xrc_C, 2xsd_C, 1mnm_C, 5hod_A, 1puf_B, 1k61_B, 4xrm_B, 1zq3_P, 1b72_A, 1o4x_A, 1le8_B, 1du0_A, 3l1p_A, 8g87_X, 4qtr_D, 6m3d_C |
Binding Motifs: | 6es3_K rTnGTAAw |
Binding Sites: | 6es3_A 6es3_F |
Publications: | Morgunova E, Yin Y, Das PK, Jolma A, Zhu F, Popov A, Xu Y, Nilsson L, Taipale J. Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima. Elife : (2018). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.