Transcription Factor
| Accessions: | T05444 (AthalianaCistrome v4_May2016), F4IED2 (JASPAR 2024) |
| Names: | ANAC013, AT1G32870, T05444;, NAC domain-containing protein 13, NAC13_ARATH, Protein NTM1-like 1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 528 |
| Pfam Domains: | 10-135 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MDLSVENGGLAPGFRFHPTDEELVVYYLKRKIRRKKLRVEAIGETDVYKFDPEELPEKAL 60 61 YKTRDRQWFFFSLRDRKHGSRSSRATERGYWKATGKDRVIHCDSRPVGEKKTLVFHRGRA 120 121 PNGERTNWVMHEYTLHKEELKRCGGEDVKDAYVLYKIYKKSGSGPKNGEQYGAPFIEEEW 180 181 AEDDDDDVDEPANQLVVSASVDNSLWGKGLNQSELDDNDIEELMSQVRDQSGPTLQQNGV 240 241 SGLNSHVDTYNLENLEEDMYLEINDLMEPEPEPTSVEVMENNWNEDGSGLLNDDDFVGAD 300 301 SYFLDLGVTNPQLDFVSGDLKNGFAQSLQVNTSLMTYQANNNQFQQQSGKNQASNWPLRN 360 361 SYTRQINNGSSWVQELNNDGLTVTRFGEAPGTGDSSEFLNPVPSGISTTNEDDPSKDESS 420 421 KFASSVWTFLESIPAKPAYASENPFVKLNLVRMSTSGGRFRFTSKSTGNNVVVMDSDSAV 480 481 KRNKSGGNNDKKKKKNKGFFCLSIIGALCALFWVIIGTMGGSGRPLLW |
| Interface Residues: | 78, 81, 83, 92, 94, 96, 116, 120, 121, 122, 125 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0673 CTTGsrgarCAAGyaA M0708 dTwaCTTGsrgarCAAG MA1660.1 wdtTTaCTTGttctcCAAGtAAhh MA1660.2 TTaCTTGttctcCAAGtAA |
| Binding Sites: | MA1660.1.1 MA1660.1.10 MA1660.1.11 MA1660.1.12 / MA1660.1.3 MA1660.1.13 MA1660.1.14 MA1660.1.15 MA1660.1.16 MA1660.1.17 MA1660.1.18 MA1660.1.19 MA1660.1.2 MA1660.1.20 MA1660.1.1 / MA1660.1.3 MA1660.1.2 / MA1660.1.4 MA1660.1.5 MA1660.1.6 MA1660.1.7 MA1660.1.8 MA1660.1.9 MA1660.1.7 MA1660.1.8 MA1660.1.4 MA1660.1.10 MA1660.1.11 MA1660.1.12 MA1660.1.13 MA1660.1.14 MA1660.1.15 MA1660.1.16 MA1660.1.17 MA1660.1.18 MA1660.1.19 MA1660.1.20 MA1660.1.5 MA1660.1.6 MA1660.1.9 MA1660.2.1 MA1660.2.10 MA1660.2.11 MA1660.2.12 MA1660.2.13 MA1660.2.14 MA1660.2.15 MA1660.2.16 MA1660.2.17 MA1660.2.18 MA1660.2.19 MA1660.2.2 MA1660.2.20 MA1660.2.3 MA1660.2.4 MA1660.2.5 MA1660.2.6 MA1660.2.7 MA1660.2.8 MA1660.2.9 |
| Publications: | De Clercq I, Vermeirssen V, Van Aken O, Vandepoele K, Murcha MW, Law SR, Inzé A, Ng S, Ivanova A, Rombaut D, van de Cotte B, Jaspers P, Van de Peer Y, Kangasjärvi J, Whelan J, Van Breusegem F. The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. Plant Cell 25:3472-90 (2013). [Pubmed] |
| Related annotations: | PaperBLAST |
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