Transcription Factor

						

			
Accessions: T075863_1.02 (CISBP 1.02)

			
Names: estExt_fgenesh1_pg.C_370003, T075863_1.02;
Organisms: Physcomitrella patens
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Dof
Length: 733
Pfam Domains:   291-350 Dof domain, zinc finger
Sequence: 
(in bold interface residues)		   1 MGSSSHENGGDEPRVSKPATVFLGDLSLSGEGPGFCGYSGPTHANTVNYDLGSHKEHYLH   60
  61 QPQPEGEKGGLADRMNRNKVILVILGFCFTSISYLQYSDFLRHMGQQPSLISKDAEGQTT  120
 121 GLELNASEVKTHLSCENPITNDVEDDDDGLSGAADKLQGDVAGVHEIVVTPFPLSSEKQE  180
 181 SETEPLDSIHLKSNSGDVVADGSSLELANELQNEVPGVSGLDQSAGTEALGPPQHQTAKL  240
 241 EEGTVGRRPLAVADNEDTVGSVRPPPVDGDLVGPSPKQAKVQHQKPALKKPDKLAPCPRC  300
 301 DSLDTKFCYYNNYNANQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKTKHGNSHVRHGGLL  360
 361 DIPAARQDSDMALSRPCLSRGASVPDQVSPLPASSSSSPSTITSLPSSQDRSSSDAVTQT  420
 421 CSMRPAEAVRKHHIPEPQVNVSGDSGNRLLKAEHGGGCEPVLAGEAENCAEACTSSLPGS  480
 481 PQVDAALASQEVQSMLRGPPTTLIPVCGGIVRPVGILDGSVWTAAPTPFGLFNGSWPYGY  540
 541 NVGWSGPAPGAPGAPTCPPGGTLVSCQPAVAWSAPPNGLWSNVCWGSTLIPGMPAGLPGP  600
 601 SWMSPGWGAGWPMPWGPDAAAAAAAAASASMQVPAVPMSGNVSPVQSRLPIRPVLNKHPR  660
 661 DRPELERVESSLWVPKMVKIDDAVNTPRSSVWTAVGAENRVETVASGSNFKAFLPVGDNK  720
 721 VSITSGDRKQVKS
Interface Residues: 131, 242, 244, 246, 270, 273, 275, 277, 278, 280, 281, 283, 303, 306, 309, 331, 333, 334, 642, 672
3D-footprint Homologues: 3a01_E, 8rzv_A, 6e94_A, 4cja_A
Binding Motifs: M0661_1.02 wcktwwamgw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.