Transcription Factor
Accessions: | T116567_1.02 (CISBP 1.02) |
Names: | PK28565.1, T116567_1.02; |
Organisms: | Cannabis sativa |
Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Notes: | experiment type:PBM, family:Myb/SANT |
Length: | 255 |
Pfam Domains: | 49-94 Myb-like DNA-binding domain 52-110 Myb-like DNA-binding domain 103-145 Myb-like DNA-binding domain 104-152 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 PFPPNPIFFISSPFSKSPKFKSPFSKTPQSITQNSKMATITRKEMDRIKGPWSPEEDDSL 60 61 QKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTAEEDDTIIRAHARFG 120 121 NKWATIARLLNGRTDNAIKNHWNSTLKRKCSTMLEETDNGHGHVSGGGGGGGRAGGYDCN 180 181 YPQPLKRSVSAGSGIPVSTGLYMNHPGSPSGSDVSDSSVPTVGCTTLSPSHVFRPVPRTG 240 241 GVLVETASSSNNNNN |
Interface Residues: | 49, 54, 83, 84, 85, 86, 88, 89, 92, 93, 94, 135, 136, 139, 140, 143, 144, 145 |
3D-footprint Homologues: | 1vfc_A, 3osg_A, 6uw0_B, 2kdz_A, 1w0t_A, 7xur_A, 3zqc_A, 7c4r_A, 5eyb_B, 6kks_A, 1mse_C |
Binding Motifs: | M1313_1.02 rACmGTTA |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.