Transcription Factor
| Accessions: | UP00216A (UniPROBE 20160601), Q9D350 (JASPAR 2024) |
| Names: | 7420700M11Rik, AU015708, AU024152, Obox1, oocyte specific homeobox 1, Oocyte-specific homeobox 1, Q9D350_MOUSE |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q9D350 |
| Description: | oocyte specific homeobox 1 |
| Length: | 204 |
| Pfam Domains: | 95-151 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MAEGPSLHPKLQVDSNIPIEISSQIPQEPARNLAFQMRQSPLVTPGSTTKSSLSVPERNL 60 61 LKQESQGPSRQSGCMLLSDKYVNKQTGPMASRKFRKERTVYTKEQQGLLQKHFDECQYPN 120 121 KKKIVELALSVGVTKREIKIWFKNNRAKYRRMNLQNIEQVLPESNGSSKAVSESTHFPVV 180 181 ASDNGESMCSGTFGEDSIPKFNCS |
| Interface Residues: | 49, 51, 53, 55, 62, 64, 90, 92, 93, 94, 95, 96, 97, 98, 100, 102, 104, 106, 136, 137, 139, 140, 143, 144, 147, 148, 151 |
| 3D-footprint Homologues: | 6x1j_A, 1mnm_C, 5zfz_A, 2h1k_B, 1puf_A, 1fjl_B, 3cmy_A, 1ig7_A, 6a8r_A, 3d1n_M, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 2ld5_A, 7q3o_C, 6es3_K, 4xrs_G, 4j19_B, 3a01_E, 6m3d_C, 1au7_A, 5flv_I, 5zjt_E, 2hdd_A, 1b72_A, 5hod_A, 3rkq_B, 2r5y_A, 1puf_B, 2hos_A, 7psx_B, 5jlw_D, 4cyc_A, 1jgg_B, 1e3o_C, 1le8_A, 7xrc_C, 2xsd_C, 3l1p_A, 1o4x_A, 4qtr_D, 8g87_X, 4xrm_B, 1du0_A |
| Binding Motifs: | UP00216A_1 ttarGGGGATTAAcwwy PH0121.1 ttarGGGGATTAAcwwy |
| Binding Sites: | AATAATCC AGGATTAA AGGATTAT AGGGATTA ATAATCCC ATTAATCC CGGATTAA CGGGATTA CTAATCCC CTTAATCC GAGGATTA GATAATCC GCTAATCC GGATTAAA GGATTAAC GGATTATA GGGATTAA GGGATTAC TAATCCCA TAATCCTA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.