Transcription Factor

						

			
Accessions: T075504_1.02 (CISBP 1.02), O80928 (JASPAR 2024), T07249 (AthalianaCistrome v4_May2016)

			
Names: ATDOF2.4, T075504_1.02;, Dof zinc finger protein DOF2.4, DOF24_ARATH, Protein PHLOEM EARLY DOF 1, AT2G37590, DOF2.4, T07249;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:Dof, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF
Length: 330
Pfam Domains:    86-145 Dof domain, zinc finger
Sequence: MVFSSIQAYLDSSNWQQAPPSNYNHDGTGASANGGHVLRPQLQPQQQPQQQPHPNGSGGG
GGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCR
RYWTRGGALRNVPVGGGCRRNRRTKSNSNNNNNSTATSNNTSFSSGNASTISTILSSHYG
GNQESILSQILSPARLMNPTYNHLGDLTSNTKTDNNMSLLNYGGLSQDLRSIHMGASGGS
LMSCVDEWRSASYHQQSSMGGGNLEDSSNPNPSANGFYSFESPRITSASISSALASQFSS
VKVEDNPYKWVNVNGNCSSWNDLSAFGSSR
Binding Motifs: M0648_1.02 awAAmGt
MA0982.1 awAAmGt
M0252 wwwtTTwaCTTTTTk
M0269 wwaaacAWAAAGTda
MA0982.2 AAmG
Binding Sites: MA0982.1.1
MA0982.1.10
MA0982.1.11
MA0982.1.12
MA0982.1.13
MA0982.1.14
MA0982.1.15
MA0982.1.16
MA0982.1.17
MA0982.1.18
MA0982.1.19
MA0982.1.2
MA0982.1.20
MA0982.1.3
MA0982.1.4
MA0982.1.5
MA0982.1.6
MA0982.1.7
MA0982.1.8
MA0982.1.9
MA0982.2.18
MA0982.2.17
MA0982.2.1
MA0982.2.10
MA0982.2.11
MA0982.2.12
MA0982.2.13
MA0982.2.14
MA0982.2.15
MA0982.2.16
MA0982.2.19
MA0982.2.2
MA0982.2.20
MA0982.2.3 / MA0982.2.4
MA0982.2.5
MA0982.2.6
MA0982.2.7
MA0982.2.8
MA0982.2.9
			
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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