Transcription Factor
| Accessions: | Q9SQX9 (JASPAR 2024) |
| Names: | ANAC050, NAC domain containing protein 50, NAC50_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 447 |
| Pfam Domains: | 27-154 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MGRESLAVVSSPPSATAPSTAVSATSLAPGFRFHPTDEELVSYYLKRKVLGKPVRFDAIG 60 61 EVDIYKHEPWDLAVFSKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIR 120 121 RDIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETETNGSLLQDAYVLCRVFHKNN 180 181 IGPPSGNRYAPFMEEEWADGGGALIPGIDVRVRVEALPQANGNNQMDQEMHSASKDLINI 240 241 NELPRDATPMDIEPNQQNHHESAFKPQESNNHSGYEEDEDTLKREHAEEDERPPSLCILN 300 301 KEAPLPLLQYKRRRQNESNNNSSRNTQDHCSSTITTVDNTTTLISSSAAAATNTAISALL 360 361 EFSLMGISDKKENQQKEETSPPSPIASPEEKVNDLQKEVHQMSVERETFKLEMMSAEAMI 420 421 SILQSRIDALRQENEELKKKNASGQAS |
| Interface Residues: | 95, 100, 102, 111, 113, 115, 135, 139, 140, 141, 144 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | MA1663.1 CTTGyrwhrCAMGtwA MA1663.2 whrCAAGtAAChw MA1663.3 CAAGtAAC |
| Binding Sites: | MA1663.2.1 MA1663.2.10 MA1663.2.11 MA1663.2.12 MA1663.2.13 MA1663.2.14 MA1663.2.15 MA1663.2.16 MA1663.2.17 MA1663.2.18 MA1663.2.19 MA1663.2.2 MA1663.2.20 MA1663.2.3 MA1663.2.4 MA1663.2.5 MA1663.2.6 MA1663.2.7 MA1663.2.8 MA1663.2.9 MA1663.3.1 / MA1663.3.10 / MA1663.3.12 / MA1663.3.19 / MA1663.3.6 MA1663.3.11 / MA1663.3.15 MA1663.3.13 / MA1663.3.16 / MA1663.3.18 / MA1663.3.20 / MA1663.3.7 / MA1663.3.8 MA1663.3.14 / MA1663.3.5 MA1663.3.17 MA1663.3.2 MA1663.3.3 MA1663.3.4 MA1663.3.9 |
| Publications: | Zhang S, Zhou B, Kang Y, Cui X, Liu A, Deleris A, Greenberg MV, Cui X, Qiu Q, Lu F, Wohlschlegel JA, Jacobsen SE, Cao X. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov : (2015;1.). [Pubmed] |
| Related annotations: | PaperBLAST |
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