Transcription Factor
| Accessions: | T049229_1.02 (CISBP 1.02), SNAI1_MOUSE (HOCOMOCO 10) |
| Names: | Snai1, T049229_1.02;, Protein snail homolog 1, SNAI1_MOUSE, Zinc finger protein SNAI1 |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1, HOCOMOCO 10 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 264 |
| Pfam Domains: | 153-176 C2H2-type zinc finger 154-176 C2H2-type zinc finger 154-176 Zinc finger, C2H2 type 181-202 C2H2-type zinc finger 181-202 Zinc finger, C2H2 type 182-190 C2H2-type zinc finger 195-218 Zinc-finger double domain 208-230 C2H2-type zinc finger 208-230 Zinc finger, C2H2 type 208-228 Zinc-finger of C2H2 type 208-230 C2H2-type zinc finger 222-247 Zinc-finger double domain 236-260 C2H2-type zinc finger 236-256 C2H2-type zinc finger 236-259 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MPRSFLVRKPSDPRRKPNYSELQDACVEFTFQQPYDQAHLLAAIPPPEVLNPAASLPTLI 60 61 WDSLLVPQVRPVAWATLPLRESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASS 120 121 LEAEAFIAFPGLGQLPKQLARLSVAKDPQSRKIFNCKYCNKEYLSLGALKMHIRSHTLPC 180 181 VCTTCGKAFSRPWLLQGHVRTHTGEKPFSCSHCNRAFADRSNLRAHLQTHSDVKRYQCQA 240 241 CARTFSRMSLLHKHQESGCSGGPR |
| Interface Residues: | 154, 164, 165, 166, 167, 168, 170, 171, 173, 174, 177, 190, 191, 192, 193, 194, 196, 197, 198, 218, 219, 220, 221, 222, 223, 224, 225, 226, 229, 246, 247, 248, 249, 250, 252, 253 |
| 3D-footprint Homologues: | 2kmk_A, 7n5w_A, 6jnm_A, 7w1m_H, 6blw_A, 8ssu_A, 5kkq_D, 5ei9_F, 5kl3_A, 1ubd_C, 6ml4_A, 8ssq_A, 8h9h_G, 6e94_A, 7ysf_A, 2gli_A, 6a57_A, 2jpa_A, 1tf3_A, 8cuc_F, 7y3l_A, 3uk3_C, 6u9q_A, 5yel_A, 4x9j_A, 1f2i_J, 1tf6_A, 1g2f_F, 7txc_E, 5k5i_A, 1llm_D, 5v3j_F, 4m9v_C, 2lt7_A, 7y3m_I, 5k5l_F, 2wbs_A, 8gn3_A, 5yj3_D, 2drp_D |
| Binding Motifs: | M0424_1.02 wwTGACAgst SNAI1_MOUSE.H10MO.C|M01339 cCAGGTGg |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.