Transcription Factor

						

			
Accessions: T136947_1.02 (CISBP 1.02)

			
Names: mbr-1, T136947_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Pipsqueak
Length: 433
Pfam Domains:   157-193 helix-turn-helix, Psq domain
  346-388 helix-turn-helix, Psq domain
Sequence: 
(in bold interface residues)		   1 MNSEPKPGLAMSSHFMGTDNQDQYKGTYAMNRLSIANLLNSPSSTLPTGNDFQNFGLERQ   60
  61 INEGVLPQLLQNPWAINFWLQFQNAQLQPHLQYAALACSLVTENPLDLSNKTMNMLQKIG  120
 121 VFNSVTKSEDDESVAPEKPVDESLNKSNILRRNYTVEDLTQAVEDIRQGKLGTRRASVVY  180
 181 GIPRSTLRNKIYKLEAEGAIPSKVRRGKIAARRAEAEQKRCVEATAAAALLDAFGNQSDS  240
 241 SSSSPHASMCPSSPDSTNSSLEGTGETPEMSDKKSCSPLDPKWLESIWQNLFKTQGNVVP  300
 301 VDSANISNVDTHTPTPISEKSQKMHGNEEWKRSRPKRGQYRKYDKNALDEAVRSVRRGEM  360
 361 TVHRAGSFFGVPHSTLEYKVKERNLMRKKKDCLYSHDSSTSEDGSQLVTSTISEKSDSSS  420
 421 HTSTPIPFPISLV
Interface Residues: 95, 96, 168, 174, 183, 184, 185, 186, 188
3D-footprint Homologues: 7k30_A, 8c7u_A
Binding Motifs: M1511_1.02 wwGGCCCcyc
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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