Transcription Factor
| Accessions: | OsPTB1 (EEADannot 2023-12-22) |
| Names: | OS01G64770 |
| Organisms: | Oryza sativa |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:polypyrimidine tract-binding |
| Length: | 443 |
| Pfam Domains: | 8-74 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 9-63 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23-78 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119-177 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258-324 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 258-323 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273-328 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368-430 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 370-434 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| Sequence: (in bold interface residues) | 1 MAEPSKVIHIRNVGHEISESELLQVVQPFGTVAKLVMLRAKNQALVQMEDLASAVNVIQY 60 61 YNTIQPSVRGRNVYLQYSSHQELTTDQSSHGRNPDQEEPNRILLVTIHHMLYPITIEVLH 120 121 QVFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNIYDGCCQLDIQYSNLS 180 181 ELQVHYNNDRSRDFTNPSLPTEQRSRSSQPSYNDPSSLFGFQQPGDPYAQMSKAAMIAAA 240 241 FGGTLPPGVSGINDRCTLLVSNLNTDKIDEDKLFNLFSMYGNIVRIKILKNKPDHALIQM 300 301 ADGLQAELAVLYLKGAMLFGKKLEVNYSKYPTVTADPDARDYSTSHLNRFNSNVVKNYRH 360 361 CCAPTKMIHISALPQDITEDTIHSLVGEHGTIANSRLFETNGKTQALVLFESVEEATEAL 420 421 VEKHASKLDRTNIRISFSQMQNI |
| Interface Residues: | 369, 371, 396, 407, 429, 434, 436, 438, 439 |
| 3D-footprint Homologues: | 6dg0_A |
| Binding Motifs: | EEAD0076 TCTCTCTCTy |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.