Transcription Factor
| Accessions: | T102388_1.02 (CISBP 1.02) |
| Names: | GRMZM2G038252, T102388_1.02; |
| Organisms: | Zea mays |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 295 |
| Pfam Domains: | 117-177 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MLSRAASRIASNRRLAVRGSSGMEWVDRTKASAAAAAAAADERAGGAEGLAGYVKVMTDE 60 61 QMEVLRKQISIYATICEQLVEMHRALTEHQDTIAGIRFSNLYCDPQIIPGGHKITARQRW 120 121 QPTPMQLQILENIFDQGNGTPSKQRIKEITAELSHHGQISETNVYNWFQNRRARSKRKQA 180 181 ASLPNNAESEAEVDEESLTDKKPKSDRSLQDNKAMGAHNADRISGMHHLDTDHDQIGGMM 240 241 YGCNDNGLRSSGSSGQMSFYGNIMPNPRIDHFPGKVESSRSFSHLQHGEGFDMFG |
| Interface Residues: | 117, 118, 119, 162, 163, 165, 166, 169, 170, 173, 174, 177 |
| 3D-footprint Homologues: | 3lnq_A, 4cyc_A, 1jgg_B, 1zq3_P, 2lkx_A, 2ld5_A, 2h1k_B, 2r5y_A, 2h8r_B, 6ryd_F, 6wig_A, 5hod_A, 3cmy_A, 1fjl_B, 5jlw_D, 1ic8_B, 7q3o_C, 1au7_A, 1ig7_A, 4j19_B, 1le8_A, 6es3_K, 4xrs_G, 1nk2_P, 5zfz_A, 5flv_I, 3a01_E, 1puf_B, 8g87_X, 1b72_A, 5zjt_E, 6a8r_A, 4qtr_D, 7psx_B |
| Binding Motifs: | M1209_1.02 tCAATYAa |
| Related annotations: | PaperBLAST |
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