Transcription Factor

						

			
Accessions: T04818 (AthalianaCistrome v4_May2016)

			
Names: AT1G68200, CDM1, T04818;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), family:C3H
Length: 308
Pfam Domains:   224-248 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Sequence: 
(in bold interface residues)		   1 MENKIAPFSYSGSSAGNSSSGGVVSSSLYSDQLYKSTRNIMQQRQDMVNREALCYTRLHE   60
  61 ASLEAEALRLENTELRSMNLRLKNELNSLIRSSIQNRFDHRSPLRMLSNLSIGGNDADEV  120
 121 ENQNRTVNRDDVNDKSPTSVMENEDLNRSSLPKSISVRSNGYSKASQGGGGAAAQSGKPR  180
 181 GTVTKPGTCGQVSTTQKVYVRGGGKKEDQEEEIEVEVYNQGMTKTELCNKWQETGTCPYG  240
 241 DHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKP  300
 301 KSSLKLIT
Interface Residues: 227, 228
3D-footprint Homologues: 3s57_A
Binding Motifs: M0342 CCGAaAAwwTCGGar
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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