Transcription Factor
| Accessions: | A0A1D6NLI6 (JASPAR 2024) |
| Names: | A0A1D6NLI6_MAIZE |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 291 |
| Pfam Domains: | 120-164 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MARKCSHCGNCGHNSRTCGRETMLCEAGDNGGHGGLRLFGVQVRIGGGGAGSASMKKSYS 60 61 MDCLQLAAPGCSLVSPSTSSSSSSLLLMSIEEGSERGAPNGYLSDGPHGRAVQERKKGVP 120 121 WSEEEHRQFLSGLEKLGKGDWRGISRSYVPTRTPTQVASHAQKFFLRQSSLGKKKRRSSL 180 181 FDMVPICENSASISDPLSSEGASTSLSLNVPRHGVTSVSERAALDLNSTEEDDSRADASS 240 241 ASASGAGTRPPFPAAQTEPLQPSSLGRGRGHHCSPLDLELAMSLPAPSIGT |
| Interface Residues: | 154, 158, 159, 167, 168 |
| 3D-footprint Homologues: | 7xur_A |
| Binding Motifs: | MA1825.1 wwyCTTATCyg MA1825.2 CTTATC |
| Binding Sites: | MA1825.1.1 / MA1825.1.2 MA1825.1.10 / MA1825.1.16 MA1825.1.11 / MA1825.1.18 MA1825.1.12 / MA1825.1.20 MA1825.1.13 / MA1825.1.16 MA1825.1.14 MA1825.1.15 MA1825.1.17 MA1825.1.18 MA1825.1.19 MA1825.1.20 MA1825.1.3 / MA1825.1.7 MA1825.1.4 / MA1825.1.9 MA1825.1.10 / MA1825.1.5 MA1825.1.12 / MA1825.1.6 MA1825.1.13 / MA1825.1.7 MA1825.1.14 / MA1825.1.8 MA1825.1.15 / MA1825.1.9 MA1825.1.11 MA1825.1.17 MA1825.1.19 MA1825.1.3 MA1825.1.4 MA1825.1.5 MA1825.1.6 MA1825.1.8 MA1825.2.1 / MA1825.2.10 / MA1825.2.11 / MA1825.2.12 / MA1825.2.13 / MA1825.2.14 / MA1825.2.15 / MA1825.2.16 / MA1825.2.17 / MA1825.2.18 / MA1825.2.19 / MA1825.2.2 / MA1825.2.20 / MA1825.2.3 / MA1825.2.4 / MA1825.2.5 / MA1825.2.6 / MA1825.2.7 / MA1825.2.8 / MA1825.2.9 |
| Publications: | Rose A, Meier I, Wienand U. The tomato I-box binding factor LeMYBI is a member of a novel class of myb-like proteins. Plant J 20:641-52 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.