Transcription Factor

						

			
Accessions: Q4H2Y8 (JASPAR 2024)

			
Names: Q4H2Y8_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H2Y8
Length: 496
Pfam Domains:    26-150 'Paired box' domain
  233-288 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MATYDSCRQASSMALCFNRESLPHKGHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGAR   60
  61 PCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIF  120
 121 AWEIRDRLLNEGICNNDNIPSVSSINRVLRNLNGDHQTGGFIETTGRGPESGSQLGLEWS  180
 181 LTCNGWLPQQTMCQEQIAAEGLMGLKGKESVVESEAKDGSSEARLQLKRKLQRNRTSFTQ  240
 241 IQVEALEKEFERTHYPDVFARERLATKIDLPEARIQVWFSNRRAKWRREEKIRSQRSSAA  300
 301 SDGSDVMRRTNDQQSIGQCGVYSSVTQQHAQANHQLPAYHMPPEPYTGMNGYQMTSLPQT  360
 361 MIEHFPPMHRMHEAPYIYGLSSGGPSNLTPPPHYTSYDHDRRVEEPSHNTIPTPPSSANQ  420
 421 PSPDHDHHGSHMQPLDGGIYQASLSGMHVGHQHHALVGAQATDQSASSMIVPPMTALQNP  480
 481 ASFHTAEGYWQSGVQG
Interface Residues: 39, 71, 72, 74, 76, 77, 93, 96, 99, 141, 142, 143, 144, 146, 147, 150, 232, 233, 234, 235, 273, 274, 276, 277, 280, 281, 284, 285, 287, 288, 289
3D-footprint Homologues: 1pdn_C, 1k78_A, 6pax_A, 6a8r_A, 2h1k_B, 1fjl_B, 1puf_A, 3cmy_A, 1ig7_A, 5zfz_A, 3d1n_M, 3lnq_A, 2lkx_A, 1nk2_P, 6m3d_C, 1jgg_B, 1zq3_P, 2ld5_A, 6es3_K, 7q3o_C, 5hod_A, 3l1p_A, 1au7_A, 3a01_E, 7psx_B, 5jlw_D, 1b72_A, 4xrs_G, 2hdd_A, 3rkq_B, 2r5y_A, 1puf_B, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 1e3o_C, 1le8_A, 7xrc_C, 2xsd_C, 8g87_X, 1k61_B, 4qtr_D, 1mnm_C, 1du0_A, 1o4x_A, 1le8_B
Binding Motifs: UN0464.1 wrwttrrTTAATTrrkywww
MA2115.1 TTAATT
			
Publications: Wada S, Tokuoka M, Shoguchi E, Kobayashi K, Di Gregorio A, Spagnuolo A, Branno M, Kohara Y, Rokhsar D, Levine M, Saiga H, Satoh N, Satou Y. A genomewide survey of developmentally relevant genes in Ciona intestinalis. II : (Genes). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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