Transcription Factor

						

			
Accessions: T057761_1.02 (CISBP 1.02)

			
Names: CG3407, T057761_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:B1H, family:C2H2 ZF
Length: 714
Pfam Domains:   497-518 C2H2-type zinc finger
  509-534 Zinc-finger double domain
  523-545 Zinc finger, C2H2 type
  523-545 C2H2-type zinc finger
  537-561 Zinc-finger double domain
  551-574 Zinc finger, C2H2 type
  551-574 C2H2-type zinc finger
  565-591 Zinc-finger double domain
  580-602 Zinc finger, C2H2 type
  582-602 C2H2-type zinc finger
  594-617 Zinc-finger double domain
  608-630 Zinc finger, C2H2 type
  608-630 C2H2-type zinc finger
  623-645 Zinc-finger double domain
  636-658 Zinc finger, C2H2 type
  636-656 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MERKEVDTQQFIDHTLLANHFIMDLIDQTYKSEGPTNLSTNPSSGNSESGVGYVEKESLT   60
  61 PELNFHNTIFQFVNKSSPENDVVPHQVDAQPTFPALAIEPTVPIDVSTGLHEDEDLLYAH  120
 121 NNASCTNARKVLPHKKRISRKLKGNIDPELDHQHKHVQDVAPSSLYSCEICGYAVHTQLD  180
 181 FFAHLKQHYEPTVLEQRLVVQDPQQQHQQKEPLDMCGLSAQDKLQQEQAKLDQVFQDVQL  240
 241 NFENFHNISHHVNDVANVGVNMVLHGQATDKLNAVVVNTSSTPNSVPVVDDVEFSDTEDM  300
 301 LEGIRNVVDKVSIEDTCDELVDLELTSSGMTAPWFNNNFRDITFPALLLPGEPPPASSEP  360
 361 ATPLLKENPHVGDHMALDFLSPEKADPQEEAKLEKTLSKACEPNEQTLLVAPPACQTPPI  420
 421 PTVPPANSSIEQLRRSPLELSEAFKLEEDDMTDSRPASSFEEGDPDAEEPNECFQMEVLD  480
 481 TSLTEEAENKTRRKHFCDKCNRDFNSYNALKYHQYTHNQERSHKCDSCERSFYTQSALKA  540
 541 HERTHSGVKPFKCDKCEFQFRQWGDLKYHIISRHSDVKAHMCEFCGKSFSRRYSLVVHRR  600
 601 IHTREKNYACQYCDKTFRASSYLLSHIKVHTGERPYECSICEKKFRVSGDLKRHSRIHDP  660
 661 SRTSQPPAEKAKKKRAAASNKQLPIEEDDELATNIQNNKSDAMRDQTGQKILGL
Interface Residues: 479, 480, 481, 506, 508, 509, 512, 533, 534, 535, 536, 537, 539, 540, 542, 543, 546, 562, 563, 564, 565, 566, 567, 568, 572, 575, 576, 579, 590, 591, 592, 593, 594, 596, 597, 603, 617, 618, 619, 620, 621, 622, 625, 629, 646, 647, 648, 649, 650, 652, 653, 656, 657
3D-footprint Homologues: 5v3j_F, 8ssu_A, 1tf6_A, 8ssq_A, 7w1m_H, 1ubd_C, 7n5w_A, 8cuc_F, 8h9h_G, 6e94_A, 2jpa_A, 7txc_E, 2drp_D, 7ysf_A, 2gli_A, 1tf3_A, 2kmk_A, 6u9q_A, 2lt7_A, 7y3l_A, 8gn3_A, 7y3m_I
Binding Motifs: M4857_1.02 ksTTGACwt
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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