Transcription Factor
| Accessions: | T018211_1.02 (CISBP 1.02) |
| Names: | mdl-1, T018211_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:ChIP-seq, family:bHLH |
| Length: | 281 |
| Pfam Domains: | 97-148 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MEQQLNLGHLLTAARLLDIGALDISSLDLGALTSTSSSPGSSSPAMFDLSNESELRSLFC 60 61 GKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAHNELEKTRRANLRGCLETLKM 120 121 LVPCVSDATRNTTLALLTRARDHIIELQDSNAAQMKKLNDLRDEQDELVAELAQLQADEE 180 181 VAQATSQACQTLSQSRPESRASSFTSTSSRDSPCYLEYSPSSKPMDSHKPTIIDLYAEGL 240 241 IPRGPITFPRPLVYPHNVFDLMNLPPTPFDVSQFLPINLQV |
| Interface Residues: | 99, 100, 101, 103, 104, 107, 108, 127, 130, 135, 139 |
| 3D-footprint Homologues: | 1an4_A, 7xi3_A, 5i50_B, 5nj8_D, 7f2f_B, 4h10_A, 5v0l_A, 1am9_A, 7ssa_L, 5eyo_A, 6g1l_A, 2ql2_D, 8osl_P, 6ny1_Y |
| Binding Motifs: | M4709_1.02 gtCACGTG |
| Related annotations: | PaperBLAST |
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