Transcription Factor
| Accessions: | T097563_1.02 (CISBP 1.02) |
| Names: | T097563_1.02;, ZHX1 |
| Organisms: | Tetraodon nigroviridis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 791 |
| Pfam Domains: | 292-321 Homeobox KN domain 292-323 Homeobox domain 435-483 Homeobox domain 542-586 Homeobox domain 629-678 Homeobox domain 736-785 Homeodomain leucine-zipper encoding, Homez |
| Sequence: (in bold interface residues) | 1 RMASRRKSSTPCMVPPQESLGLDQEMEDLSASWDPESSNGAEEAARLPHAGAAEGGYECK 60 61 YCSFQTAQLNLFTVHVDTEHPDVVLNTSYVCLECDFHTRSYDTLQAHNARSHPGEDNFTR 120 121 TMVKRNKETVFQQTVNDLTFDGSFIKEEEAAEEEEAKEAPNRSIAFSKTPIMRVRSRPEP 180 181 KKFRLAADDVIKVESEDEEDEAPAAGAVPGAGDARRPLPGTRVHAAAAAEHRSGGGGGVL 240 241 PAGTLAQVLAALQNQQSSAQTQLLIPVSSIPTYNSAMDNNVLLLQPTAGRFPYPSVTEIT 300 301 GLSSQTKFSEEQIKVWFSAQRLKHGVSWTPEEVEEARRKKFNGTVQTAPPTITVIPAGIA 360 361 ASGLPPLFQTCQIVGQPGLVLTQVAASASPLTLTVAGLPGNQPKAAEPAATESRTEMSAG 420 421 ASLGSDPAAGKPKKSKEQLAELKASYSRRQFASEEEISRLMQVTQLSKRAIKKWFSDTRY 480 481 NQRNSREHAGLHEADSQADGNAPIVIDSSDDASDASPTSGDLRVKFRHAFPDFTPQKFKE 540 541 KTAEQLLVLEASFQRSDTPSDEELSRLRAQTKLTRREVDAWFTERRKASAATPPKDADPE 600 601 GEGPRTKAGACSTPEGPATPPGGRKILKKTPEQLHTLKKAFVRTQWPTADEYEQLSRDTG 660 661 LPRTYIVNWFGDTRYACKNSNLKWFYLYQSGKVDEALNGGTKTQKKSRKRFRGWSRRTRR 720 721 PYACKRSPQGGAAAIKVKSGSEFLKDYYLKHRGLSERDLDDLVAKSSMSYEQVRDWFSRT 780 781 SRRAQEGQELF |
| Interface Residues: | 68, 69, 70, 71, 74, 106, 314, 315, 318, 319, 322, 473, 476, 477, 480, 483, 484, 538, 576, 577, 579, 580, 583, 584, 587, 623, 626, 668, 671, 672, 675, 676, 775, 778, 779, 782, 783 |
| 3D-footprint Homologues: | 6u9q_A, 2xsd_C, 1ig7_A, 8g87_X, 7psx_B, 3l1p_A, 5flv_I, 3rkq_B, 1nk2_P, 6fqq_E, 5zjt_E, 2ld5_A, 7xrc_C, 1e3o_C, 1au7_A, 7q3o_C, 3cmy_A, 2h1k_B, 6es3_K, 2lkx_A, 1o4x_A, 4xrs_G, 5zfz_A, 6a8r_A, 6m3d_C, 1du0_A, 5hod_A, 3d1n_M, 4xrm_B, 2hdd_A, 1fjl_B, 1puf_B, 3lnq_A, 2hos_A, 1zq3_P |
| Binding Motifs: | M1076_1.02 TyACGyCA |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.