Transcription Factor

						

			
Accessions: T073876_1.02 (CISBP 1.02)

			
Names: LIN54, T073876_1.02;
Organisms: Gallus gallus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:CxC
Length: 755
Pfam Domains:   528-565 Tesmin/TSO1-like CXC domain
  600-640 Tesmin/TSO1-like CXC domain
Sequence: 
(in bold interface residues)		   1 AKMEVVSAEVNSLLPEEIMDTGITLVEDDSIEAVIVSSPMGDSIPMETELEEIVNISSTS   60
  61 DASVTTTATVTAEPVTAPSNHSGDVTANTTTIKTEGNSVVKPAFQSGLHKLGAQTPVTIS  120
 121 ANQIILNKTTDLKIGNQSIKPDGQKLIVTTLGKTGQPIVLALPRCQLPQAQKTVSQTQGG  180
 181 DSKVQGQQIKVVIGGRSEVKPVVGVSALTQGSQLINTAAQPSVLQTQQLKTVQIAKKTRT  240
 241 ATSGPVITKLIFAKPINSKAVTGQTTQVSPVIIIGRVVSQSTPGTPPKTITISESGVIGS  300
 301 SLSTTTQQTPNKIAISPLKSPNKAVKSAVQAITVGGVGTSQFKTIIPLATAPNVQQIQVP  360
 361 GSKFHYVRLVTATTANSSTQSASQNPSTNTQPLQQAKPVVVNATPVRMSVPIVPAQTVKQ  420
 421 VVPKPLNPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLP  480
 481 AQYVTQLQQSSYVSIASNTGFTGTSSIQSQARLPFNGIIPSESANRPRKPCNCTKSLCLK  540
 541 LYCDCFANGEFCNNCNCTNCYNNLDHENDRQKAIKACLDRNPEAFKPKIGKGKEGESDRR  600
 601 HSKGCNCKRSGCLKNYCECYEAKIMCSSICKCVGCKNFEESPERKTLMHLADAAEVRVQQ  660
 661 QTAAKTKLSSQISDLLTRPTPALSSGGGKLPFTFVTKEVADATCECLLAQAEQAEKMGKS  720
 721 KAAAERMILEEFGRCLMRVINSAGKSKSDPCAMNC
Interface Residues: 542, 616
3D-footprint Homologues: 5fd3_A, 4rkh_F
Binding Motifs: M0594_1.02 wTTTrAATt
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.