Transcription Factor
| Accessions: | Q4H3I0 (JASPAR 2024) |
| Names: | Q4H3I0_CIOIN |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q4H3I0 |
| Length: | 916 |
| Pfam Domains: | 334-410 Fork head domain |
| Sequence: (in bold interface residues) | 1 MAKNCKGKHKPKACRPIILQRKHPLPSILSSLKQTNAASMKTNDPESEVAATKTEQVAEL 60 61 TSEDLSQNFPSNPMFSSEQQPTTVKHEQQELTSSQPWNQTSAYENDIQIKSENILSNATS 120 121 NPQQGNFGTFLNTQFVQCPPGSQMSNVMIKQEPGSHQFVDTSQNMGIYQNHGAMKTMYHS 180 181 VPNVQMSNMDPYNQTVLNEVPLTTQSQYQTHGNVGQCNQFTYPYGSMSEMQAHSYAPNYY 240 241 QQAIQPNAVHSGQNMPQPQPSAHFQATNQLGVQMPPNARYHIQGFSSQANFVDQAVDDSL 300 301 TNITWLGRMGVNNFMPVPIERDRKVYERTEKRGRPPYSYMALIQFAINSSSTGKMTLRQI 360 361 YQWIEEKFPYFKSAKPGWKNSIRHNLSLHDIFVRQVTTGSKASYWTLRSDLNIRPLTLDS 420 421 VRGTSHHTFQDTSNPQDPSWSLQTVMQGQKPILPRLPQRPYILLPVPLINNGTNDKDMTQ 480 481 STTTVDVQTPSVYNSTPLPTLHTDKDNRRLSSQDGSSFLTDSGFISDLSMFTPSNCLLNS 540 541 VEKRLQKKSATSDSSPLLSQTQVLSGKKGTTKKSRKEPLKTLNDSLNSSLNFEKNEDTSP 600 601 GKLLASNCSQFLVSKQPVKKEKPKTPEFLKKSAMGLTEDSFDEMLEDLGSPFKSYFTKTA 660 661 EAEAFSTPRANTGSRKRRCSWGSPESSKEVQNRIKTENEVTLSNRSIRRVKSCVGDLRQN 720 721 YADEVKNNLAIVKTKQVPTSTPLNKQKWQKSKGCDDMNIEENKENVMECFQQGTKHTEEH 780 781 WDKDENGHHSIPSPIHSTSKNPEFDFFHDLIGSVFKTPDKRSNPGSNFDNLTPERIPLCD 840 841 ITQRQKPNPAVKTEAATTSDSLGPPPALLSPKFEPLDTSFSKLLDISGGSGTFSRMNTHF 900 901 SDVADLSLSWSNFSHL |
| Interface Residues: | 329, 331, 357, 374, 376, 377, 379, 380, 381, 383, 384, 385, 387, 388, 394, 401 |
| 3D-footprint Homologues: | 7yzb_A, 7yzg_A, 8vfz_O, 3l2c_A, 8bzm_E, 7vox_H, 2hdc_A, 7yz7_A, 6el8_A, 7tdx_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7tdw_A, 3g73_A, 8sro_B, 3qrf_G |
| Binding Motifs: | MA1871.1 maaaaamAAACAAaaamaam MA1871.2 AAACAA |
| Publications: | José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed] |
| Related annotations: | PaperBLAST |
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