Transcription Factor

						

			
Accessions: T11326 (AthalianaCistrome v4_May2016), Q9SCW5 (JASPAR 2024)

			
Names: AT3G02990, HSFA1E, T11326;, AtHsf-06, AtHsfA1e, Heat shock factor protein 2, Heat shock transcription factor 2, Heat stress transcription factor A-1e, HFA1E_ARATH, HSF 2, HSTF 2
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:HSF
Length: 468
Pfam Domains:    24-115 HSF-type DNA-binding
Sequence: 
(in bold interface residues)		   1 MGTVCESVATAKSSTAVMSSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAK   60
  61 QFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQP  120
 121 PQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQK  180
 181 VHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRLPVEDQMNSGSHG  240
 241 VNGLSRQIVRYQSSMNDATNTMLQQIQQMSNAPSHESLSSNNGSFLLGDVPNSNISDNGS  300
 301 SSNGSPEVTLADVSSIPAGFYPAMKYHEPCETNQVMETNLPFSQGDLLPPTQGAAASGSS  360
 361 SSDLVGCETDNGECLDPIMAVLDGALELEADTLNELLPEVQDSFWEQFIGESPVIGETDE  420
 421 LISGSVENELILEQLELQSTLSNVWSKNQQMNHLTEQMGLLTSDALRK
Interface Residues: 68, 69, 74, 76, 77, 78, 80, 81, 112
3D-footprint Homologues: 5hdn_C, 3hts_B, 5d5v_B, 5d5w_B, 7dci_A
Binding Motifs: M0459 rGAAgcTTCTAGA
M0460 aGAAgcTTCTAGAAg
MA1758.1 aGAAgcTTCTAGAAg
MA1758.2 aGAAgcTTCTAGAA
			
Publications: Wu C. Heat shock transcription factors: structure and regulation. Annu Rev Cell Dev Biol : (1995;11:441-69.). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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