Transcription Factor
| Accessions: | T134689_1.02 (CISBP 1.02) |
| Names: | nhr-216, T134689_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Nuclear receptor |
| Length: | 427 |
| Pfam Domains: | 60-128 Zinc finger, C4 type (two domains) 220-412 Ligand-binding domain of nuclear hormone receptor |
| Sequence: (in bold interface residues) | 1 MQSSSNIYIDPSMYPRYEYANLDISSFERSPTFEQPPSYPTYDQHVQFLPEIENNGPKQK 60 61 CRVCNLEAHGMHFGVQTCRPCAAFFRRIVVLDLKYTCVSNTQKCNVDGRGRNVCRDCRYK 120 121 KCIAVGMTTDNVQYNRDSHNNKNSSGSGGGRGRGKNKRNVMMMLTDEEEAAGSMMALHRL 180 181 PKTFGNCCFTGKFGRSTICRFCDTINAFTDGKAHLQRKSEKFSKWVKCVDFFDKLSDEQK 240 241 IDTVKMSFTVFDRLERAQMSVKIFGEKSITEKKTTLSSYCAVDWKNVKINPETAINTEQA 300 301 NNYVKAEFHAHVDSIIDEVCKPLYELQLSDTETAFILVQVLVYHGGEKVTPELVKMFDQL 360 361 RETIATDLHLYYTKESQTGTDTNRILKMMSVVNAMKKIHADRVRKSDLIQIFNIYKVSEK 420 421 RTDFNCS |
| Interface Residues: | 69, 70, 72, 73, 79, 80, 82, 83, 86, 87, 112, 134, 136 |
| 3D-footprint Homologues: | 6fbq_A, 6l6q_B, 7wnh_D, 1a6y_A, 1lo1_A, 3g9m_B, 4oln_B, 2a66_A, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 8cef_H, 4iqr_B, 2han_A, 1hcq_E, 8hbm_B, 5krb_G, 2han_B, 1kb2_B, 4tnt_B, 5e69_A, 4hn5_B, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A, 5cbz_E |
| Binding Motifs: | M1480_1.02 sTTCTGAYy |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.