DNA Binding Site
| Accessions: | AATTAATG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | AATTAATG |
| Type: | Heterodimer |
| Binding TFs: | UP00224A (Homeobox domain, 'Paired box' domain) UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00168A (Homeobox domain) UP00170A (Homeobox domain, Homeobox KN domain) UP00197A (Homeobox domain) UP00200A (Homeobox domain) UP00218A (Homeobox domain) UP00238A (Homeobox domain) UP00247A (Homeobox domain, 'Paired box' domain) UP00255A (Homeobox domain) UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00611D (Homeobox domain, 'Paired box' domain) UP00617A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00624B (Homeobox domain) |
| Binding Motifs: | UP00200A_2 rrtwATTAATKAykyc UP00255A_1 twrttaATTAwtaawwr UP00118A_1 wrtwATTAATkArkyc UP00168A_1 taadTAATTAATrgctw UP00170A_1 mhmaAyymMTTAakwy UP00197A_1 rkagGTMATWAAyydk UP00200A_1 gmwwATTAATTAmyybg UP00218A_1 bktmAtTAATkAakwm UP00224A_1 TrayTAATTArtkvac UP00238A_1 gawwwTTAATKAmtkyk UP00247A_1 wsawyTAATTAryysdm UP00585B_1 wywmtskkyTAATTAhmmkrkda UP00611D_1 whwydkgkTAATTAkcawawwaw UP00617A_1 TawArtTTATTAATAhttwwab UP00617B_1 twrmrtwTATTAATAwwbwtay UP00617D_1 thravkTTATTAATAwtktmak UP00624B_1 trvgwbgsTaATtAgcmwawwmw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.