DNA Binding Site

						

			
Accessions: CCCACCCA (UniPROBE 20160601)

			
Organisms: Mus musculus, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: CCCACCCA
Type: Heterodimer
Binding TFs: UP00538A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00540A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00587C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00599A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00599C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
UP00629B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Motifs: UP00538A_1 / UP00538A_2 kkgasrGGACCACCCrGrtmGm
UP00538A_3 rhkvchwrCCmCCCACrctgtkk
UP00538A_4 / UP00538A_5 hmsrgyrGACCACCCaGsdgGw
UP00538A_6 swtmrbyaCCrCCCACattmttr
UP00540A_1 / UP00540A_2 sykksvrGACCACCCAcrwysmt
UP00540A_3 kmTTvvCryGGwGGTCywrmyt
UP00540A_4 / UP00540A_5 hasrgkgGACCACCCrgvdrgw
UP00540A_6 rytcmhygCCaCmCacgckhgy
UP00587C_1 skrgcwrGGGGGGGsrGdyarkk
UP00599A_1 wsdymysCCCCrCCCmsyygrm
UP00599C_2 wwhywmcCCGCCCmmCcrbksws
UP00629B_1 dttdryggGGtGgGwawakamck
			
Publications: Peterson KA, Nishi Y, Ma W, Vedenko A, Shokri L, Zhang X, McFarlane M, Baizabal JM, Junker JP, van Oudenaarden A, Mikkelsen T, Bernstein BE, Bailey TL, Bulyk ML, Wong WH, McMahon AP. Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning. Genes Dev 26:2802-16 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.