DNA Binding Site
| Accessions: | ATATTAAA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATATTAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00356A (Helix-loop-helix DNA-binding domain) UP00473A (bZIP transcription factor) UP00244A (Homeobox domain) UP00604D (Homeobox domain) UP00626B (Homeobox domain) |
| Binding Motifs: | UP00356A_1 rkmkkakCACGTGmyyrvwc UP00244A_1 kwatyAATTAATaayww UP00473A_1 / UP00473A_2 gsmmamtATTACGTAAtgsmryc UP00473A_3 ATTAcTAAT UP00604D_1 amaTtawatavrtatwywaTwa UP00626B_1 ygwwwhwttTwATATagwaawaw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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