DNA Binding Site
| Accessions: | AAATTAAT (UniPROBE 20160601), MA2310.1.6 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Homo sapiens, Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AAATTAAT |
| Type: | Heterodimer |
| Binding TFs: | UP00224A (Homeobox domain, 'Paired box' domain) UP00078A (ARID/BRIGHT DNA binding domain) UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00169A (Homeobox domain, Homeobox KN domain) UP00188A (Homeobox domain, Homeobox KN domain) UP00218A (Homeobox domain) UP00247A (Homeobox domain, 'Paired box' domain) UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00268A (Homeobox domain) UP00294A (SRF-type transcription factor (DNA-binding and dimerisation domain)) UP00341A UP00610A (Homeobox domain, 'Paired box' domain) UP00610B (Homeobox domain, 'Paired box' domain) UP00617A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) Q8IN81 |
| Binding Motifs: | UP00078A_1 sgktTTAATTAAwmtwy UP00118A_1 wrtwATTAATkArkyc UP00128A_1 swtAaTTAATTArkkyr UP00169A_1 rrwwwTTAATTAAtwyb UP00188A_1 sgawTTAATTAAwwwyy UP00218A_1 bktmAtTAATkAakwm UP00224A_1 TrayTAATTArtkvac UP00247A_1 wsawyTAATTAryysdm UP00254A_1 dtdwrwTAATTArktw UP00268A_1 cgyddwtTAATTAawksgrm UP00294A_1 tkacctwtAATTawaybwsmw UP00341A_1 ryarwwAWwWWwWTwywawm UP00078A_2 hmmvrtATcrdrtyk UP00610A_3 wwkrmycaATTAATtwgkkcdc UP00610B_1 twwwkcbkttTAATTAasmasgk UP00617A_1 TawArtTTATTAATAhttwwab UP00617B_1 twrmrtwTATTAATAwwbwtay UP00617D_1 thravkTTATTAATAwtktmak MA2310.1 AAAGTAAT |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Zhu LJ, Christensen RG, Kazemian M, Hull CJ, Enuameh MS, Basciotta MD, Brasefield JA, Zhu C, Asriyan Y, Lapointe DS, Sinha S, Wolfe SA, Brodsky MH. FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system. Nucleic Acids Res : (2011). [Pubmed] |
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