DNA Binding Site
| Accessions: | GTTTACGA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | GTTTACGA |
| Type: | Heterodimer |
| Binding TFs: | UP00235A (Homeobox domain, Protein of unknown function (DUF3528)) UP00117A (Homeobox domain) UP00135A (Homeobox domain) UP00177A (Homeobox domain) UP00183A (Homeobox domain) UP00245A (Homeobox domain) UP00597C (Homeobox domain, Homeobox KN domain) |
| Binding Motifs: | UP00117A_1 ywarGTCGTAAAawyht UP00135A_1 ywrgGTCGTAAAwwywc UP00177A_1 ywavGTCGTAAAatywt UP00183A_1 wwwbCTCGTAAAawtt UP00235A_1 yaarGTCGTAAAayrk UP00245A_1 twarGTCRTAAAaysk UP00597C_1 hmdywrsCTCGTWAAatmwtwa UP00597C_2 yhgyarssTCGTAAAatywtma |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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