DNA Binding Site
| Accessions: | ACGCAACT (UniPROBE 20160601), MA1675.2.19 (JASPAR 2024), MA1675.2.4 (JASPAR 2024), MA2015.2.14 (JASPAR 2024), MA2015.2.15 (JASPAR 2024) |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ACGCAACT |
| Type: | Heterodimer |
| Binding TFs: | O49255 (No apical meristem (NAM) protein) Q39013 (No apical meristem (NAM) protein) UP00574A (No apical meristem (NAM) protein) UP00576A (No apical meristem (NAM) protein) UP00579A (No apical meristem (NAM) protein) UP00580A (No apical meristem (NAM) protein) UP00581A O49255 Q39013 |
| Binding Motifs: | UP00574A_1 gtTTACGTAAycw UP00574A_2 mwayACGCAAcyk UP00576A_1 stACACGCAAcC UP00576A_2 gggTAAGkAAwht UP00579A_1 wrCACGGmACyt UP00579A_2 gtACACGsAACy UP00580A_1 waCACGymACyb UP00580A_2 rkACACGsAACy UP00581A_1 dvGGTwGCGTAa UP00581A_2 hdAGTCAACGyhr MA1675.2 ACGcAACT MA2015.2 ACGcAACT |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
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