DNA Binding Site

Accessions: ACCAATTA (UniPROBE 20160601)
Organisms: Mus musculus, Drosophila melanogaster, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: ACCAATTA
Type: Heterodimer
Binding TFs: UP00104A (Homeobox domain)
UP00120A (Homeobox domain)
UP00126A (Homeobox domain)
UP00131A (Homeobox domain)
UP00136A (Homeobox domain, Homeobox KN domain)
UP00138A (Homeobox domain)
UP00139A (Homeobox domain)
UP00141A (Homeobox domain)
UP00145A (Homeobox domain)
UP00149A (Homeobox domain)
UP00151A (Homeobox domain)
UP00152A (Homeobox domain)
UP00155A (Homeobox domain)
UP00156A (Homeobox domain)
UP00163A (Homeobox domain, Engrailed homeobox C-terminal signature domain)
UP00166A (Homeobox domain)
UP00167A (Homeobox domain, Engrailed homeobox C-terminal signature domain)
UP00171A (Homeobox domain)
UP00172A (Homeobox domain, Homeobox KN domain)
UP00175A (Homeobox domain, Homeobox KN domain)
UP00178A (Homeobox domain)
UP00181A (Homeobox domain)
UP00187A (Homeobox domain)
UP00202A (Homeobox domain)
UP00204A (Homeobox domain)
UP00220A (Homeobox domain)
UP00221A (Homeobox domain)
UP00230A (Homeobox domain)
UP00234A (Homeobox domain)
UP00243A (Homeobox domain)
UP00253A (Homeobox domain)
UP00257A (Homeobox domain)
UP00266A (Homeobox domain)
UP00157A (Homeobox domain)
UP00209A (Homeobox domain, Homeobox KN domain)
UP00506A (Homeobox domain)
UP00507A (Homeobox domain)
UP00510A (Homeobox domain)
UP00584A (Homeobox domain)
UP00584B (Homeobox domain)
UP00584C (Homeobox domain)
UP00584D (Homeobox domain)
UP00584E (Homeobox domain)
UP00584F (Homeobox domain)
UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
UP00588A (Homeobox domain)
UP00588B (Homeobox domain, Homeobox KN domain)
UP00594A (Homeobox domain)
UP00594B (Homeobox domain)
UP00594C (Homeobox domain)
UP00598A (Homeobox domain)
UP00598B (Homeobox domain)
UP00603A (Homeobox domain)
UP00603B (Homeobox domain)
UP00603C (Homeobox domain)
UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609C (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609D (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00610C (Homeobox domain, 'Paired box' domain)
UP00611A (Homeobox domain, 'Paired box' domain)
UP00611D (Homeobox domain, 'Paired box' domain)
UP00614A (Homeobox domain)
UP00614B (Homeobox domain)
UP00614C (Homeobox domain)
UP00614D (Homeobox domain)
UP00614E (Homeobox domain)
UP00616E (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00619B (Homeobox domain, Homeobox KN domain)
UP00619C (Homeobox domain, Homeobox KN domain)
UP00624A (Homeobox domain)
UP00624B (Homeobox domain)
UP00625A (Homeobox domain)
UP00625B (Homeobox domain)
UP00625C (Homeobox domain)
UP00625D (Homeobox domain)
UP00626A (Homeobox domain)
Binding Motifs: UP00104A_1 msvAGCAATTAAwgvwt
UP00120A_1 tgmayYAATTRryksrr
UP00126A_1 vrdrYAATTRbhymag
UP00131A_1 dscrCTAATTAGysrkt
UP00136A_1 wvmrYTAATTARygrwr
UP00138A_1 vmrgyAATTrsytsAd
UP00139A_1 dtbcryYAATTRrtrcw
UP00141A_1 csaryTAATTAryratt
UP00145A_1 aamAAcCAATTAAswh
UP00149A_1 vrkaaTTAATTAAyrsg
UP00151A_1 taakYAATTRrtkrtr
UP00152A_1 gtscryTAATTArtksw
UP00155A_1 acaAgCAATTAAwgvrT
UP00156A_1 vmagACyAATTAgykht
UP00157A_1 asaAgCAATTAAwrrat
UP00163A_1 wgmmyYAATTRrygrah
UP00166A_1 aamAAcCAATTArkwc
UP00167A_1 gsvAAcTAATTArkgc
UP00171A_1 mamAAcyAATTAAktw
UP00172A_1 cgmrTTAATTAAkwdac
UP00175A_1 csyayTAATTArtymcy
UP00178A_1 cgsryyAATTrrkways
UP00181A_1 marsyAATTrsygaaw
UP00187A_1 cgcryTAATTArthasc
UP00202A_1 btgarrTAATTAay
UP00204A_1 wdsmaCYAATTRGtgbw
UP00209A_1 cgmryTAATTArtymcy
UP00220A_1 wgmrcyAATTrgyGsgr
UP00221A_1 yrkmAyTAATTAryrv
UP00230A_1 ssrgyAATTrsykmts
UP00234A_1 krmwayTAATTAatwm
UP00243A_1 hmyvCyAATTrGkbgw
UP00253A_1 wscayYAATTRryssmy
UP00257A_1 ckmsyTAATTArtyrds
UP00266A_1 vkaayTAATTAryTast
UP00209A_2 crmrTTAATTAAttgrm
UP00506A_1 amkwgvryyAATTrrcksacyw
UP00507A_1 tarcrsCrCyAATTAgygywyy
UP00510A_1 myacTgrrcTAATTAscsbrdr
UP00584A_2 aAgdwcgCyAATTrGckmbtgm
UP00584B_1 wcywgmvaysayATGTactarms
UP00584B_2 wtwhtddkmTAATTAvmshwkrw
UP00584C_1 aakwkcgCTAATTAGybsrygy
UP00584C_2 kavwsrsCyAATTrGyysmrka
UP00584D_1 Trrkdgbayaattrtwrmtwdw
UP00584E_1 tkacggwtTAATTAatywtckk
UP00584E_2 wymdwkgkTAATTAwcmwatwaw
UP00584F_1 amgatrayTAATTArygsbgcm
UP00584F_2 mAkrdyrCyAATTrGckrwtgm
UP00585B_1 wywmtskkyTAATTAhmmkrkda
UP00588A_1 mahrgcGCTAATTAGygcswGm
UP00588B_1 tcakvkGyTAATTAgChaAdwma
UP00594A_1 gkscscryTAATTArymmgcgg
UP00594A_2 ryrtkwrCyAATTrGtbgwmgw
UP00594B_1 rcrwrdsCYAATTRGtkgwwsw
UP00594C_1 kkycscryTAATTArtmakcsg
UP00594C_2 wmakhtgcyAATTrrcmwrwwhw
UP00598A_1 mctwkrsCTAATTAGagcmssg
UP00598A_2 makkcmaACYAATTAdswsdky
UP00598B_1 ykyrscmYTAATTAAkmwsckg
UP00598B_2 gkcmscryTAATTArkvhkssb
UP00603A_1 mtwyaaaAAcCAATTAacwmray
UP00603A_2 bwyraaaacYAATTAaywhwmby
UP00603B_2 ssgksgcAkYAATTAskmmymya
UP00603C_1 awwsydrACYAATTAdsgcmdy
UP00603C_2 ydmmayrCyAATTrGtmwtyrs
UP00609A_1 ctmwrkTAATCGATTAdckwtc
UP00609B_1 kawmktTAATCGATTAmyrrad
UP00609C_1 krwmktTAATCGATTActrgmd
UP00609D_1 katckwTAATCGATTAmyrsak
UP00609E_1 kawmktTAATCGATTActrgad
UP00609G_1 kawmkyTAATCGATTAmyrkmd
UP00609H_1 kawmktTAATCGATTAcyksad
UP00610C_1 aakwsswyTAATTArygsacbw
UP00610C_2 aakwgswyTAATTArygsacbw
UP00611A_2 tymwakgkTAATTArcatdwwmw
UP00611D_1 whwydkgkTAATTAkcawawwaw
UP00614A_1 tkcrwkrstrATyagyaaawwaa
UP00614B_1 wsvgakssTAATTAgsmawwwmw
UP00614C_1 wwmwchkcAkTAATTAkscrtaw
UP00614D_1 wwmwymkcAkTAATTAbcCrtmw
UP00614E_1 wbmrwkgvtrATyakcmwwwwmw
UP00616E_1 kgmcgyyyTAATTArwcakcrg
UP00619B_1 rwrtdTwwtyyAATTArkwywaw
UP00619C_1 AwgtwTAATyTAATTAwtwkwg
UP00624A_1 wwmdwkgbTAATTAkcmawwawa
UP00624B_1 trvgwbgsTaATtAgcmwawwmw
UP00625A_1 wAgrkkgCTAATTAGbsvyykw
UP00625B_1 wAgdkbrCTAATTAGysryhgw
UP00625C_1 wtmkmgGcTAATTArCmmAwwaw
UP00625D_1 aAkrtsrCTAATTAGcgrthgw
UP00626A_1 wtmcryrYTAATTARkrrwgrg
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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