DNA Binding Site
| Accessions: | CAATTAAG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CAATTAAG |
| Type: | Heterodimer |
| Binding TFs: | UP00104A (Homeobox domain) UP00155A (Homeobox domain) UP00178A (Homeobox domain) UP00187A (Homeobox domain) UP00157A (Homeobox domain) UP00209A (Homeobox domain, Homeobox KN domain) UP00510A (Homeobox domain) UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00598A (Homeobox domain) UP00598B (Homeobox domain) UP00603C (Homeobox domain) UP00610C (Homeobox domain, 'Paired box' domain) UP00610D (Homeobox domain, 'Paired box' domain) |
| Binding Motifs: | UP00104A_1 msvAGCAATTAAwgvwt UP00155A_1 acaAgCAATTAAwgvrT UP00157A_1 asaAgCAATTAAwrrat UP00178A_1 cgsryyAATTrrkways UP00187A_1 cgcryTAATTArthasc UP00209A_1 cgmryTAATTArtymcy UP00209A_2 crmrTTAATTAAttgrm UP00510A_1 myacTgrrcTAATTAscsbrdr UP00585B_1 wywmtskkyTAATTAhmmkrkda UP00598A_1 mctwkrsCTAATTAGagcmssg UP00598B_1 ykyrscmYTAATTAAkmwsckg UP00603C_1 awwsydrACYAATTAdsgcmdy UP00610C_1 aakwsswyTAATTArygsacbw UP00610C_2 aakwgswyTAATTArygsacbw UP00610D_1 varwsgcytAATTarkccmwwk UP00610D_2 aakwgshyTAATTArygsackw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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