DNA Binding Site
| Accessions: | CATTAATG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CATTAATG |
| Type: | Heterodimer |
| Binding TFs: | UP00263A (Homeobox domain) UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00144A (Homeobox domain) UP00170A (Homeobox domain, Homeobox KN domain) UP00182A (Homeobox domain) UP00189A (Homeobox domain) UP00196A (Homeobox domain) UP00214A (Homeobox domain) UP00218A (Homeobox domain) UP00242A (Homeobox domain) UP00259A (Homeobox domain) UP00512A (Homeobox domain) UP00584D (Homeobox domain) UP00595A (Homeobox domain) UP00595B (Homeobox domain) UP00596A (Homeobox domain) UP00611G (Homeobox domain, 'Paired box' domain) UP00614E (Homeobox domain) UP00617A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00623B (Homeobox domain) UP00624B (Homeobox domain) |
| Binding Motifs: | UP00259A_1 wwtksgTAATTACsdy UP00118A_1 wrtwATTAATkArkyc UP00144A_1 cgmrTTAATTAAtwahy UP00170A_1 mhmaAyymMTTAakwy UP00182A_1 amgkTAATTACcymak UP00189A_1 amgkTAATTAscwmar UP00196A_1 grttrtTAATTAackbg UP00214A_1 amgkTAATTAschmat UP00218A_1 bktmAtTAATkAakwm UP00242A_1 twkrrgTAATTAhykt UP00263A_1 wsykGyAATTAAtarw UP00512A_1 aawraarGGTAATTAmydkwkw UP00584D_1 Trrkdgbayaattrtwrmtwdw UP00595A_1 TdanrbbrTAATTAytrywawww UP00595B_2 ttmyyargTAATTAcydwtwwA UP00596A_1 rAawwaATAATmATTAkycwwwr UP00611G_1 taTkkatgtgTGCAcacdkmygh UP00614E_1 wbmrwkgvtrATyakcmwwwwmw UP00617A_1 TawArtTTATTAATAhttwwab UP00617B_1 twrmrtwTATTAATAwwbwtay UP00617D_1 thravkTTATTAATAwtktmak UP00623B_2 whatskGyTAATTAsCycAdtar UP00624B_1 trvgwbgsTaATtAgcmwawwmw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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