DNA Binding Site

Accessions: 5d4s_U (3D-footprint 20231221)
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Length: 20
Sequence: AATACATACGTACAAATATT
Type: Heterodimer
Binding TFs: 5d4s_A (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
5d4s_B (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
Binding Motifs: 5d4s_A CGTATGT
5d4s_AB CrtACGnaCA
Publications: Jain D, Narayanan N, Nair DT. Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators. J Biol Chem 291:1235-42 (2016). [Pubmed]

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