DNA Binding Site

						

			
Accessions: CCTCATTA (UniPROBE 20160601)

			
Organisms: Mus musculus, Drosophila melanogaster, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: CCTCATTA
Type: Heterodimer
Binding TFs: UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00129A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00132A (Homeobox domain)
UP00158A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00179A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00146A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00506A (Homeobox domain)
UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00623A (Homeobox domain)
UP00623B (Homeobox domain)
Binding Motifs: UP00105A_1 rmttAATTAATTAadtc
UP00118A_1 wrtwATTAATkArkyc
UP00128A_1 swtAaTTAATTArkkyr
UP00129A_1 rmyTAATTAATTAaktm
UP00132A_1 ymcmGCTAATTAGckkw
UP00146A_1 vwmswTAATKAGstkgm
UP00158A_1 rrwtAATTAATTAwgtc
UP00179A_1 ttkTATGCWAATkara
UP00191A_1 ywkTATGCWAATkara
UP00254A_1 dtdwrwTAATTArktw
UP00146A_2 rhasATAATGAGstkkc
UP00506A_1 amkwgvryyAATTrrcksacyw
UP00618A_1 wwvrybagcTAATTArkgywmt
UP00618B_1 wyhcgrgcTAATTAkcycarwaw
UP00618C_1 twwmrybagcTAATTArbrywmt
UP00623A_2 wtakcggsYAATTRscymAdwar
UP00623B_1 whmtrkGsTAATTAsCccAtwaa
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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