DNA Binding Site

Accessions: 1b3t_C (3D-footprint 20231221), 1b3t_D (3D-footprint 20231221)
Organisms: Epstein-Barr virus (strain B95-8) (HHV-4), Human herpesvirus 4
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Length: 18
Sequence: GGGAAGCATATGCTTCCC
Binding TFs: 1b3t_A / 1b3t_B (Epstein Barr virus nuclear antigen-1, DNA-binding domain)
Binding Motifs: 1b3t_A GCTTCCC
1b3t_AB GGGAAGCaTAnGCTTCCC
Publications: Bochkarev A, Bochkareva E, Frappier L, Edwards A.M. The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1. Journal of molecular biology 284:1273-8 (1998). [Pubmed]

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