DNA Binding Site

Accessions: 5xxp_E (3D-footprint 20231221)
Organisms: Cupriavidus necator, Cupriavidus necator (Alcaligenes eutrophus)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Length: 25
Sequence: CTATATTACGCAAACCGTAACGATG
Binding TFs: 5xxp_A / 5xxp_B (Bacterial regulatory helix-turn-helix protein, lysR family)
Binding Motifs: 5xxp_A CGTAAnnnTG
5xxp_AB TtACgnnnnncGTAAnnnT
Publications: Koentjoro MP, Adachi N, Senda M, Ogawa N, Senda T. Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region. FEBS J 285:977-989 (2018). [Pubmed]

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