DNA Binding Site
| Accessions: | AAGTACTT (UniPROBE 20160601) |
| Organisms: | Mus musculus, Caenorhabditis elegans, Homo sapiens, Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | AAGTACTT |
| Type: | Heterodimer |
| Binding TFs: | UP00107A (Homeobox domain) UP00147A (Homeobox domain) UP00165A (Homeobox domain) UP00228A (Homeobox domain) UP00231A (Homeobox domain) UP00249A (Homeobox domain) UP00396A (Homeobox domain) UP00480A (Ankyrin repeat, Ankyrin repeats (3 copies), Ankyrin repeat, Ankyrin repeats (many copies), Ankyrin repeats (many copies)) UP00504A (Homeobox domain) UP00604A (Homeobox domain) UP00604C (Homeobox domain) UP00605A (Homeobox domain) UP00605B (Homeobox domain) |
| Binding Motifs: | UP00107A_1 waarCCACTTrAmwty UP00147A_1 trAkCCACTTrAvwtt UP00165A_1 yaAgCCACTTgAmhtt UP00228A_1 mwtawSCACTTAavmay UP00231A_1 hwarCCACTTGArawtw UP00249A_1 hrakCCACTTrAawty UP00396A_1 / UP00396A_2 tsdywrrCCACTTsAmawtwmk UP00480A_3 wakwstkarTGGGAAmtwwbmkd UP00504A_1 GrayyrrCCACTTAryyytgaw UP00604A_1 mwawtwwAAGYRCTTAAawyyw UP00604C_1 mwawtwwAAGYRCTTAAawyyw UP00605A_1 twwrrrdCCACTyGAvwtysks UP00605B_1 twtrrrkCCACTygAvwtygks |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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