DNA Binding Site
| Accessions: | AATCGATA (UniPROBE 20160601), MA0529.3.9 (JASPAR 2024) |
| Organisms: | Mus musculus, Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AATCGATA |
| Type: | Heterodimer |
| Binding TFs: | UP00114A (Homeobox domain) Q94513 (BED zinc finger, BESS motif) Q94513 |
| Binding Motifs: | UP00114A_1 awwwmATCGTTTttadd MA0529.3 TATCGATA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Yang J, Ramos E, Corces V.G. The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species. Genome research 22:2199-207 (2012). [Pubmed] |
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