DNA Binding Site
| Accessions: | AATTGTTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | AATTGTTA |
| Type: | Heterodimer |
| Binding TFs: | UP00004A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00014A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00016A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00051A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00064A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00071A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00091A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00101A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) UP00307A (Homeobox domain, Homeobox KN domain) UP00034A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Motifs: | UP00004A_1 khtaATTATAATwwdm UP00014A_1 mwaAACAATTrAwhw UP00016A_1 khkwATTATAATrwtm UP00034A_1 mwtrwwrAACAATarawythyw UP00051A_1 kkatywATTGTTmwkwa UP00064A_1 twyhATTGTTbtmamw UP00071A_1 hwtwATTATAATwdwk UP00091A_1 wwdrgAACAATwaahw UP00101A_1 twATTGTTcthawh UP00307A_1 htdtwrAACAATAGwmytmc UP00004A_2 ykyasACAATrgmks UP00014A_2 gwycacATTCAtryrat UP00016A_2 yydmdraACAATrrryg UP00034A_2 gtsswaATTrwstgwgkrcksy UP00051A_2 acATTCAtgamass UP00064A_2 gkrsyraATtyrwdhm UP00101A_2 mmwyasACAAAGrawt UP00071A_2 vvycwATTGTtcckhkr UP00091A_2 wwtCatmAttwasdd |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.